miRNA display CGI


Results 41 - 60 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 223147 0.66 0.887382
Target:  5'- uCCGCgAGaacCACGCccGCAgucuggaGGCCGCa -3'
miRNA:   3'- -GGCGgUCguaGUGCG--CGUag-----CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 223088 0.69 0.747397
Target:  5'- -gGCCAGCga-ACGUGCGUagaucugcgggauggCGGCCGUc -3'
miRNA:   3'- ggCGGUCGuagUGCGCGUA---------------GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 223065 0.68 0.78828
Target:  5'- gCCGCCGGCggUACgGCcaguuccccgGCcUCGGCCGa -3'
miRNA:   3'- -GGCGGUCGuaGUG-CG----------CGuAGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 223023 0.67 0.860002
Target:  5'- uCCGCCGGUcgCACGgccaGCAcgccgaCGGCCu- -3'
miRNA:   3'- -GGCGGUCGuaGUGCg---CGUa-----GCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 222645 0.66 0.89928
Target:  5'- -gGCCGGCAg-GCGCGCAgCGccuccacGCUGCc -3'
miRNA:   3'- ggCGGUCGUagUGCGCGUaGC-------CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 222587 0.68 0.806109
Target:  5'- gCGCUGGCGgaugaaaACGCGCAgcucgcggaacuccgCGGCCGa -3'
miRNA:   3'- gGCGGUCGUag-----UGCGCGUa--------------GCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 222366 0.71 0.647176
Target:  5'- gCCGCgCAGCccgcgGUCGaagcggcacaggcCGCGCGUCuugagcaGGCCGCa -3'
miRNA:   3'- -GGCG-GUCG-----UAGU-------------GCGCGUAG-------CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 222110 0.69 0.760974
Target:  5'- gCCGCCAGCggCAgccacagccggauCGCGC--CGGCCa- -3'
miRNA:   3'- -GGCGGUCGuaGU-------------GCGCGuaGCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 222013 0.69 0.768123
Target:  5'- gUCGCuCAGCAUCugcaggcagggcgaACGCaGUAUCGGCgGg -3'
miRNA:   3'- -GGCG-GUCGUAG--------------UGCG-CGUAGCCGgCg -5'
14035 5' -59.1 NC_003521.1 + 221905 0.66 0.899886
Target:  5'- uUGCCGGCG-CGCgGCGCcacccuUCGgggcuGCCGCg -3'
miRNA:   3'- gGCGGUCGUaGUG-CGCGu-----AGC-----CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 221815 0.66 0.887382
Target:  5'- uCCGUCGGCGgggCGgGCGUGUCucccucGUCGCg -3'
miRNA:   3'- -GGCGGUCGUa--GUgCGCGUAGc-----CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 221760 0.72 0.562616
Target:  5'- gCGUCAGCGUC-UGCGCcgCG-CCGCc -3'
miRNA:   3'- gGCGGUCGUAGuGCGCGuaGCcGGCG- -5'
14035 5' -59.1 NC_003521.1 + 220125 0.67 0.845194
Target:  5'- gCGCCAGguUgGCGgGCGguUCGcugucuucuucGCCGCu -3'
miRNA:   3'- gGCGGUCguAgUGCgCGU--AGC-----------CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 220106 0.73 0.506612
Target:  5'- aCCGCCAGCggUACGgGUcgCGuCCGCc -3'
miRNA:   3'- -GGCGGUCGuaGUGCgCGuaGCcGGCG- -5'
14035 5' -59.1 NC_003521.1 + 219681 0.69 0.734542
Target:  5'- aCUGCCGGUAcucugggaucUCugGCGgguCGUCGGCaGCg -3'
miRNA:   3'- -GGCGGUCGU----------AGugCGC---GUAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 218909 0.69 0.761871
Target:  5'- cCCGCCAGgGUCuCGacuGCGUCagcaGGCUGUa -3'
miRNA:   3'- -GGCGGUCgUAGuGCg--CGUAG----CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 218621 0.73 0.506612
Target:  5'- gCCGCCAGCG-CGCG-GCGguaagCGGCCa- -3'
miRNA:   3'- -GGCGGUCGUaGUGCgCGUa----GCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 218572 0.73 0.506612
Target:  5'- cCCGaCCAGCAUCcugaaGCGCGUCaGCCa- -3'
miRNA:   3'- -GGC-GGUCGUAGug---CGCGUAGcCGGcg -5'
14035 5' -59.1 NC_003521.1 + 218462 0.67 0.829699
Target:  5'- -gGCCGGCAcCACGC-CGUgGG-CGCa -3'
miRNA:   3'- ggCGGUCGUaGUGCGcGUAgCCgGCG- -5'
14035 5' -59.1 NC_003521.1 + 218417 0.71 0.658743
Target:  5'- gCCGCgCAGCAUgGCcaGCGaCAgCGGCgGCa -3'
miRNA:   3'- -GGCG-GUCGUAgUG--CGC-GUaGCCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.