miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14050 5' -52.3 NC_003521.1 + 80533 0.66 0.996382
Target:  5'- -gCAGCGACgacgagUACGACGAcgACGGCUa -3'
miRNA:   3'- ugGUCGCUG------AUGUUGCUagUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 124046 0.66 0.996382
Target:  5'- gGCCAGCGuGCcGCGGCG---GCGGCCc -3'
miRNA:   3'- -UGGUCGC-UGaUGUUGCuagUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 36987 0.66 0.996382
Target:  5'- -gCGGCGACauccGCGACGAgggcgUCGCGGCg- -3'
miRNA:   3'- ugGUCGCUGa---UGUUGCU-----AGUGCUGga -5'
14050 5' -52.3 NC_003521.1 + 75545 0.66 0.996382
Target:  5'- uUCAGCGGCgccgGCGGCGGcUACG-CCa -3'
miRNA:   3'- uGGUCGCUGa---UGUUGCUaGUGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 60493 0.66 0.996382
Target:  5'- cACUAGCaGAaaccACAACGAUagcaucacCACGGCCUa -3'
miRNA:   3'- -UGGUCG-CUga--UGUUGCUA--------GUGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 135658 0.66 0.996382
Target:  5'- cCCAGCGuCgGCGGCGucGUCACcACCUc -3'
miRNA:   3'- uGGUCGCuGaUGUUGC--UAGUGcUGGA- -5'
14050 5' -52.3 NC_003521.1 + 138330 0.66 0.996382
Target:  5'- gACCuGCGGCUgcGCGACGGcgucUCG-GGCCUc -3'
miRNA:   3'- -UGGuCGCUGA--UGUUGCU----AGUgCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 194678 0.66 0.996382
Target:  5'- gGCCAG-GAUgguCAGCGucuccaucAUCGCGGCCg -3'
miRNA:   3'- -UGGUCgCUGau-GUUGC--------UAGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 116685 0.66 0.996382
Target:  5'- -gCGGCGGCggagGCAGCGG-CGCGGgCg -3'
miRNA:   3'- ugGUCGCUGa---UGUUGCUaGUGCUgGa -5'
14050 5' -52.3 NC_003521.1 + 112318 0.66 0.996325
Target:  5'- cCCAGCGACUcgcugucGCAggccgGCGcgCACaGCCUc -3'
miRNA:   3'- uGGUCGCUGA-------UGU-----UGCuaGUGcUGGA- -5'
14050 5' -52.3 NC_003521.1 + 109887 0.66 0.995782
Target:  5'- cACCAGUaACUGCGuGCGAcCuCGACCg -3'
miRNA:   3'- -UGGUCGcUGAUGU-UGCUaGuGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 223874 0.66 0.995782
Target:  5'- uGCCAGCGAaucccCGACGGUaACGGCg- -3'
miRNA:   3'- -UGGUCGCUgau--GUUGCUAgUGCUGga -5'
14050 5' -52.3 NC_003521.1 + 186690 0.66 0.995782
Target:  5'- cGCCGGCGGuaGCAGCaugCACGACg- -3'
miRNA:   3'- -UGGUCGCUgaUGUUGcuaGUGCUGga -5'
14050 5' -52.3 NC_003521.1 + 45421 0.66 0.995782
Target:  5'- aGCCGGUGcCcGCcgucggcGCGGUCAUGGCCUc -3'
miRNA:   3'- -UGGUCGCuGaUGu------UGCUAGUGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 42065 0.66 0.995782
Target:  5'- cACgAGCGGCgcgacCAGCGAgCACGGCa- -3'
miRNA:   3'- -UGgUCGCUGau---GUUGCUaGUGCUGga -5'
14050 5' -52.3 NC_003521.1 + 42801 0.66 0.995782
Target:  5'- cCCGGCGGCUGCAcGCGccgcaACGGCa- -3'
miRNA:   3'- uGGUCGCUGAUGU-UGCuag--UGCUGga -5'
14050 5' -52.3 NC_003521.1 + 168408 0.66 0.995782
Target:  5'- cGCCguuGGUGGCUAgGGCGGgcggCAgGGCCg -3'
miRNA:   3'- -UGG---UCGCUGAUgUUGCUa---GUgCUGGa -5'
14050 5' -52.3 NC_003521.1 + 28909 0.66 0.995782
Target:  5'- cGCUGcGCGACUACAACGugcucuUCucuAUGGCCa -3'
miRNA:   3'- -UGGU-CGCUGAUGUUGCu-----AG---UGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 89746 0.66 0.995782
Target:  5'- -gCGGUGACgGCAGCcggCGCGGCCg -3'
miRNA:   3'- ugGUCGCUGaUGUUGcuaGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 37520 0.66 0.995782
Target:  5'- gAUCAGCGACaGCAACGG-CA--ACCUg -3'
miRNA:   3'- -UGGUCGCUGaUGUUGCUaGUgcUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.