Results 1 - 20 of 154 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 88468 | 0.66 | 0.531167 |
Target: 5'- -cG-CCCCG-GCCGGccccagagcagcgucGgCGCgGGCCCg -3' miRNA: 3'- aaCaGGGGCuCGGCC---------------CgGCGgCCGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 197338 | 0.66 | 0.527605 |
Target: 5'- gUUGgCCgCCGcGGCCagcacGGCCGCCgcgcuGGCCCg -3' miRNA: 3'- -AACaGG-GGC-UCGGc----CCGGCGG-----CCGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 119713 | 0.66 | 0.527605 |
Target: 5'- -cGUCCaCC-AGCCucagcgggauGGCC-CCGGCCCg -3' miRNA: 3'- aaCAGG-GGcUCGGc---------CCGGcGGCCGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 195907 | 0.66 | 0.527605 |
Target: 5'- -cGUCCUCGucuucGUCcucGCCGCCGcGCCCg -3' miRNA: 3'- aaCAGGGGCu----CGGcc-CGGCGGC-CGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 216428 | 0.66 | 0.527605 |
Target: 5'- aUGcUCCgCGGGCCcGG-CGCCGGCUUu -3' miRNA: 3'- aAC-AGGgGCUCGGcCCgGCGGCCGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 116357 | 0.66 | 0.527605 |
Target: 5'- ---aCCgCGAGCgCGGcggcgaacgcguGCCGCCgcGGCCCa -3' miRNA: 3'- aacaGGgGCUCG-GCC------------CGGCGG--CCGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 73888 | 0.66 | 0.527605 |
Target: 5'- ----gCCCGAGauCCGcaaGGCCGUgGGCCCc -3' miRNA: 3'- aacagGGGCUC--GGC---CCGGCGgCCGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 234994 | 0.66 | 0.527605 |
Target: 5'- -aGggCCCCGGucGCCGGGaC-CCGGCaCCa -3' miRNA: 3'- aaCa-GGGGCU--CGGCCCgGcGGCCG-GG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 142275 | 0.66 | 0.527605 |
Target: 5'- -cGggCUCGGGCUGGGacCCGCCgccgcugcagcGGCCCa -3' miRNA: 3'- aaCagGGGCUCGGCCC--GGCGG-----------CCGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 149531 | 0.66 | 0.527605 |
Target: 5'- --cUCUUCGAGUCGGGCgGCgCGcGCUCc -3' miRNA: 3'- aacAGGGGCUCGGCCCGgCG-GC-CGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 2456 | 0.66 | 0.526716 |
Target: 5'- --aUCCCCGcGCCccgcuauGGGUacgcgacggCGCCGGCCa -3' miRNA: 3'- aacAGGGGCuCGG-------CCCG---------GCGGCCGGg -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 138057 | 0.66 | 0.52494 |
Target: 5'- -gGUCgCCCGcgaccgccgcggacAGCUGaGG-CGCUGGCCCu -3' miRNA: 3'- aaCAG-GGGC--------------UCGGC-CCgGCGGCCGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 144872 | 0.66 | 0.518741 |
Target: 5'- -gGUCCCCGAaccGCauccgugaGGGCUcugauCCGGCUCg -3' miRNA: 3'- aaCAGGGGCU---CGg-------CCCGGc----GGCCGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 83540 | 0.66 | 0.518741 |
Target: 5'- ---cCCCCGua-CGcGGCCGCCGuuGCCCc -3' miRNA: 3'- aacaGGGGCucgGC-CCGGCGGC--CGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 126965 | 0.66 | 0.518741 |
Target: 5'- -cGgaaCCCGcGCCGucGUCGCCGGCCg -3' miRNA: 3'- aaCag-GGGCuCGGCc-CGGCGGCCGGg -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 154925 | 0.66 | 0.518741 |
Target: 5'- cUGaCCaaGAGUCGGGUCauGUCGGCCUu -3' miRNA: 3'- aACaGGggCUCGGCCCGG--CGGCCGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 128362 | 0.66 | 0.518741 |
Target: 5'- gUGgCCCC--GCCGGGCgCGCCcaccagGGCCg -3' miRNA: 3'- aACaGGGGcuCGGCCCG-GCGG------CCGGg -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 114398 | 0.66 | 0.518741 |
Target: 5'- --aUCCUCGAccGCCuGGCCGCCaucgcgcagGGCCg -3' miRNA: 3'- aacAGGGGCU--CGGcCCGGCGG---------CCGGg -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 175768 | 0.66 | 0.518741 |
Target: 5'- -gGUCCCCGGGCuCGuuguuagaGGCauaccccacaGCCucGGCCCu -3' miRNA: 3'- aaCAGGGGCUCG-GC--------CCGg---------CGG--CCGGG- -5' |
|||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 127772 | 0.66 | 0.518741 |
Target: 5'- --cUCCUCGuAGUCGGGCgGC-GGCCg -3' miRNA: 3'- aacAGGGGC-UCGGCCCGgCGgCCGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home