miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 88468 0.66 0.531167
Target:  5'- -cG-CCCCG-GCCGGccccagagcagcgucGgCGCgGGCCCg -3'
miRNA:   3'- aaCaGGGGCuCGGCC---------------CgGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 119713 0.66 0.527605
Target:  5'- -cGUCCaCC-AGCCucagcgggauGGCC-CCGGCCCg -3'
miRNA:   3'- aaCAGG-GGcUCGGc---------CCGGcGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 195907 0.66 0.527605
Target:  5'- -cGUCCUCGucuucGUCcucGCCGCCGcGCCCg -3'
miRNA:   3'- aaCAGGGGCu----CGGcc-CGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 197338 0.66 0.527605
Target:  5'- gUUGgCCgCCGcGGCCagcacGGCCGCCgcgcuGGCCCg -3'
miRNA:   3'- -AACaGG-GGC-UCGGc----CCGGCGG-----CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 234994 0.66 0.527605
Target:  5'- -aGggCCCCGGucGCCGGGaC-CCGGCaCCa -3'
miRNA:   3'- aaCa-GGGGCU--CGGCCCgGcGGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 116357 0.66 0.527605
Target:  5'- ---aCCgCGAGCgCGGcggcgaacgcguGCCGCCgcGGCCCa -3'
miRNA:   3'- aacaGGgGCUCG-GCC------------CGGCGG--CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 216428 0.66 0.527605
Target:  5'- aUGcUCCgCGGGCCcGG-CGCCGGCUUu -3'
miRNA:   3'- aAC-AGGgGCUCGGcCCgGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 73888 0.66 0.527605
Target:  5'- ----gCCCGAGauCCGcaaGGCCGUgGGCCCc -3'
miRNA:   3'- aacagGGGCUC--GGC---CCGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 142275 0.66 0.527605
Target:  5'- -cGggCUCGGGCUGGGacCCGCCgccgcugcagcGGCCCa -3'
miRNA:   3'- aaCagGGGCUCGGCCC--GGCGG-----------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 149531 0.66 0.527605
Target:  5'- --cUCUUCGAGUCGGGCgGCgCGcGCUCc -3'
miRNA:   3'- aacAGGGGCUCGGCCCGgCG-GC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 2456 0.66 0.526716
Target:  5'- --aUCCCCGcGCCccgcuauGGGUacgcgacggCGCCGGCCa -3'
miRNA:   3'- aacAGGGGCuCGG-------CCCG---------GCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 138057 0.66 0.52494
Target:  5'- -gGUCgCCCGcgaccgccgcggacAGCUGaGG-CGCUGGCCCu -3'
miRNA:   3'- aaCAG-GGGC--------------UCGGC-CCgGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 114398 0.66 0.518741
Target:  5'- --aUCCUCGAccGCCuGGCCGCCaucgcgcagGGCCg -3'
miRNA:   3'- aacAGGGGCU--CGGcCCGGCGG---------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 175768 0.66 0.518741
Target:  5'- -gGUCCCCGGGCuCGuuguuagaGGCauaccccacaGCCucGGCCCu -3'
miRNA:   3'- aaCAGGGGCUCG-GC--------CCGg---------CGG--CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 127772 0.66 0.518741
Target:  5'- --cUCCUCGuAGUCGGGCgGC-GGCCg -3'
miRNA:   3'- aacAGGGGC-UCGGCCCGgCGgCCGGg -5'
14058 5' -67.6 NC_003521.1 + 144872 0.66 0.518741
Target:  5'- -gGUCCCCGAaccGCauccgugaGGGCUcugauCCGGCUCg -3'
miRNA:   3'- aaCAGGGGCU---CGg-------CCCGGc----GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 128362 0.66 0.518741
Target:  5'- gUGgCCCC--GCCGGGCgCGCCcaccagGGCCg -3'
miRNA:   3'- aACaGGGGcuCGGCCCG-GCGG------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 83540 0.66 0.518741
Target:  5'- ---cCCCCGua-CGcGGCCGCCGuuGCCCc -3'
miRNA:   3'- aacaGGGGCucgGC-CCGGCGGC--CGGG- -5'
14058 5' -67.6 NC_003521.1 + 154925 0.66 0.518741
Target:  5'- cUGaCCaaGAGUCGGGUCauGUCGGCCUu -3'
miRNA:   3'- aACaGGggCUCGGCCCGG--CGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 103563 0.66 0.518741
Target:  5'- -gGcCCCCGcucuGCCcgcugccGCCGUCGGCCCc -3'
miRNA:   3'- aaCaGGGGCu---CGGcc-----CGGCGGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.