Results 1 - 20 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14063 | 3' | -61.5 | NC_003521.1 | + | 16008 | 0.66 | 0.796053 |
Target: 5'- cGCCAGCcgcagacgcCCUaCGCCacGCGCGU-CCCg -3' miRNA: 3'- cUGGUCGu--------GGA-GCGGa-CGCGCAcGGG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 104069 | 0.66 | 0.796053 |
Target: 5'- aGGCCAGCAgCUCGagcggGCGCG-GCa- -3' miRNA: 3'- -CUGGUCGUgGAGCgga--CGCGCaCGgg -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 223660 | 0.66 | 0.796053 |
Target: 5'- uGCCAGCgcugcGCCUCgGCCUcGCGCcgcUGCUg -3' miRNA: 3'- cUGGUCG-----UGGAG-CGGA-CGCGc--ACGGg -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 90025 | 0.66 | 0.796053 |
Target: 5'- -uCCAGCGCCcccuggCGgCUcGCGCccGCCCg -3' miRNA: 3'- cuGGUCGUGGa-----GCgGA-CGCGcaCGGG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 192192 | 0.66 | 0.796053 |
Target: 5'- cAUCAcGCugCUCGCgCUGCuauccgcguGCGUGCUg -3' miRNA: 3'- cUGGU-CGugGAGCG-GACG---------CGCACGGg -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 125458 | 0.66 | 0.796053 |
Target: 5'- uGCCGGC-CCUgGCCaGCgacGCGUGaCCUc -3' miRNA: 3'- cUGGUCGuGGAgCGGaCG---CGCAC-GGG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 150411 | 0.66 | 0.796053 |
Target: 5'- cGACgAGCccggACC-CGUCUGuCGCGUGCa- -3' miRNA: 3'- -CUGgUCG----UGGaGCGGAC-GCGCACGgg -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 170950 | 0.66 | 0.796053 |
Target: 5'- uGGCCuGgGCgUgGCgCUGCGCGgcgGCCUc -3' miRNA: 3'- -CUGGuCgUGgAgCG-GACGCGCa--CGGG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 138044 | 0.66 | 0.795204 |
Target: 5'- cGCCGGCGCCgucaUCGCgcagccgCUGCcgcucuaccGCGUGCaCCu -3' miRNA: 3'- cUGGUCGUGG----AGCG-------GACG---------CGCACG-GG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 130990 | 0.66 | 0.787508 |
Target: 5'- aGCaCGGUACC-CaGCCUGaCGCGggcgGCCUa -3' miRNA: 3'- cUG-GUCGUGGaG-CGGAC-GCGCa---CGGG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 138037 | 0.66 | 0.787508 |
Target: 5'- uGCCGGCGCaCggGgCUGUGgGUcGCCCg -3' miRNA: 3'- cUGGUCGUG-GagCgGACGCgCA-CGGG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 234127 | 0.66 | 0.787508 |
Target: 5'- aGAcCCAGCAgCgCUCGCggGCGCaG-GCCCu -3' miRNA: 3'- -CU-GGUCGU-G-GAGCGgaCGCG-CaCGGG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 66575 | 0.66 | 0.787508 |
Target: 5'- cGCCAGCGCaacgugCGUCUGagcuccgaCGCGccccUGCCCg -3' miRNA: 3'- cUGGUCGUGga----GCGGAC--------GCGC----ACGGG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 221935 | 0.66 | 0.787508 |
Target: 5'- uGCCgcGGCGCCUCGuCCUcGuCGC-UGCUCa -3' miRNA: 3'- cUGG--UCGUGGAGC-GGA-C-GCGcACGGG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 97268 | 0.66 | 0.782321 |
Target: 5'- cGCCAGCGauggcggcugcugcuCgUCGCCggcggcGCGCGUGCg- -3' miRNA: 3'- cUGGUCGU---------------GgAGCGGa-----CGCGCACGgg -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 117422 | 0.66 | 0.778839 |
Target: 5'- aGGgCGGCAUCUCGgguCC-GCGCG-GCCUg -3' miRNA: 3'- -CUgGUCGUGGAGC---GGaCGCGCaCGGG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 40803 | 0.66 | 0.778839 |
Target: 5'- -cCCGGCGCggucagcuaUUCGCCUcgGgGCGggGCCCg -3' miRNA: 3'- cuGGUCGUG---------GAGCGGA--CgCGCa-CGGG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 184126 | 0.66 | 0.778839 |
Target: 5'- cGACCAGCGucauCCgcuGCCUGgGCG-GCUa -3' miRNA: 3'- -CUGGUCGU----GGag-CGGACgCGCaCGGg -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 78230 | 0.66 | 0.778839 |
Target: 5'- cGACgGGCACCUUGCagaaGCGCugcacGUCCa -3' miRNA: 3'- -CUGgUCGUGGAGCGga--CGCGca---CGGG- -5' |
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14063 | 3' | -61.5 | NC_003521.1 | + | 204033 | 0.66 | 0.778839 |
Target: 5'- cGCgAGCGgCUcCGCa-GCGCGUgGCCCu -3' miRNA: 3'- cUGgUCGUgGA-GCGgaCGCGCA-CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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