miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14063 3' -61.5 NC_003521.1 + 192192 0.66 0.796053
Target:  5'- cAUCAcGCugCUCGCgCUGCuauccgcguGCGUGCUg -3'
miRNA:   3'- cUGGU-CGugGAGCG-GACG---------CGCACGGg -5'
14063 3' -61.5 NC_003521.1 + 223660 0.66 0.796053
Target:  5'- uGCCAGCgcugcGCCUCgGCCUcGCGCcgcUGCUg -3'
miRNA:   3'- cUGGUCG-----UGGAG-CGGA-CGCGc--ACGGg -5'
14063 3' -61.5 NC_003521.1 + 90025 0.66 0.796053
Target:  5'- -uCCAGCGCCcccuggCGgCUcGCGCccGCCCg -3'
miRNA:   3'- cuGGUCGUGGa-----GCgGA-CGCGcaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 125458 0.66 0.796053
Target:  5'- uGCCGGC-CCUgGCCaGCgacGCGUGaCCUc -3'
miRNA:   3'- cUGGUCGuGGAgCGGaCG---CGCAC-GGG- -5'
14063 3' -61.5 NC_003521.1 + 170950 0.66 0.796053
Target:  5'- uGGCCuGgGCgUgGCgCUGCGCGgcgGCCUc -3'
miRNA:   3'- -CUGGuCgUGgAgCG-GACGCGCa--CGGG- -5'
14063 3' -61.5 NC_003521.1 + 16008 0.66 0.796053
Target:  5'- cGCCAGCcgcagacgcCCUaCGCCacGCGCGU-CCCg -3'
miRNA:   3'- cUGGUCGu--------GGA-GCGGa-CGCGCAcGGG- -5'
14063 3' -61.5 NC_003521.1 + 104069 0.66 0.796053
Target:  5'- aGGCCAGCAgCUCGagcggGCGCG-GCa- -3'
miRNA:   3'- -CUGGUCGUgGAGCgga--CGCGCaCGgg -5'
14063 3' -61.5 NC_003521.1 + 150411 0.66 0.796053
Target:  5'- cGACgAGCccggACC-CGUCUGuCGCGUGCa- -3'
miRNA:   3'- -CUGgUCG----UGGaGCGGAC-GCGCACGgg -5'
14063 3' -61.5 NC_003521.1 + 138044 0.66 0.795204
Target:  5'- cGCCGGCGCCgucaUCGCgcagccgCUGCcgcucuaccGCGUGCaCCu -3'
miRNA:   3'- cUGGUCGUGG----AGCG-------GACG---------CGCACG-GG- -5'
14063 3' -61.5 NC_003521.1 + 234127 0.66 0.787508
Target:  5'- aGAcCCAGCAgCgCUCGCggGCGCaG-GCCCu -3'
miRNA:   3'- -CU-GGUCGU-G-GAGCGgaCGCG-CaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 130990 0.66 0.787508
Target:  5'- aGCaCGGUACC-CaGCCUGaCGCGggcgGCCUa -3'
miRNA:   3'- cUG-GUCGUGGaG-CGGAC-GCGCa---CGGG- -5'
14063 3' -61.5 NC_003521.1 + 221935 0.66 0.787508
Target:  5'- uGCCgcGGCGCCUCGuCCUcGuCGC-UGCUCa -3'
miRNA:   3'- cUGG--UCGUGGAGC-GGA-C-GCGcACGGG- -5'
14063 3' -61.5 NC_003521.1 + 66575 0.66 0.787508
Target:  5'- cGCCAGCGCaacgugCGUCUGagcuccgaCGCGccccUGCCCg -3'
miRNA:   3'- cUGGUCGUGga----GCGGAC--------GCGC----ACGGG- -5'
14063 3' -61.5 NC_003521.1 + 138037 0.66 0.787508
Target:  5'- uGCCGGCGCaCggGgCUGUGgGUcGCCCg -3'
miRNA:   3'- cUGGUCGUG-GagCgGACGCgCA-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 97268 0.66 0.782321
Target:  5'- cGCCAGCGauggcggcugcugcuCgUCGCCggcggcGCGCGUGCg- -3'
miRNA:   3'- cUGGUCGU---------------GgAGCGGa-----CGCGCACGgg -5'
14063 3' -61.5 NC_003521.1 + 78230 0.66 0.778839
Target:  5'- cGACgGGCACCUUGCagaaGCGCugcacGUCCa -3'
miRNA:   3'- -CUGgUCGUGGAGCGga--CGCGca---CGGG- -5'
14063 3' -61.5 NC_003521.1 + 204033 0.66 0.778839
Target:  5'- cGCgAGCGgCUcCGCa-GCGCGUgGCCCu -3'
miRNA:   3'- cUGgUCGUgGA-GCGgaCGCGCA-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 140315 0.66 0.778839
Target:  5'- cACCGuGCACCguccgaCGCCcGCG-GUGCCa -3'
miRNA:   3'- cUGGU-CGUGGa-----GCGGaCGCgCACGGg -5'
14063 3' -61.5 NC_003521.1 + 205769 0.66 0.778839
Target:  5'- aGACCugugugguGGCGCCgcaCGgCaUGaGCGUGCCCa -3'
miRNA:   3'- -CUGG--------UCGUGGa--GCgG-ACgCGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 117422 0.66 0.778839
Target:  5'- aGGgCGGCAUCUCGgguCC-GCGCG-GCCUg -3'
miRNA:   3'- -CUgGUCGUGGAGC---GGaCGCGCaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.