miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14064 3' -50.1 NC_003521.1 + 224511 0.66 0.999645
Target:  5'- -uGAGGAgacgucgaaGAAGCCGccGGGCCGGuaggcaccCCGg -3'
miRNA:   3'- ccUUCCU---------UUUCGGUuuUCCGGCU--------GGC- -5'
14064 3' -50.1 NC_003521.1 + 56885 0.66 0.999645
Target:  5'- cGAGGuGGAAAGCgAGA--GCUGGCCGu -3'
miRNA:   3'- cCUUC-CUUUUCGgUUUucCGGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 54234 0.66 0.999645
Target:  5'- cGAAGGGAucGCCGcgcuggAAGGGCUccuCCGu -3'
miRNA:   3'- cCUUCCUUuuCGGU------UUUCCGGcu-GGC- -5'
14064 3' -50.1 NC_003521.1 + 24177 0.66 0.999645
Target:  5'- cGGaAAGGAgcGAAGCCGGgcGGCaUGGgCGg -3'
miRNA:   3'- -CC-UUCCU--UUUCGGUUuuCCG-GCUgGC- -5'
14064 3' -50.1 NC_003521.1 + 34089 0.66 0.999645
Target:  5'- aGGGAGGuguGGUCGAuGGGcCCGAUg- -3'
miRNA:   3'- -CCUUCCuuuUCGGUUuUCC-GGCUGgc -5'
14064 3' -50.1 NC_003521.1 + 168932 0.66 0.999645
Target:  5'- aGGAGGGcgcAGGCa---GGGCCG-CCGc -3'
miRNA:   3'- -CCUUCCuu-UUCGguuuUCCGGCuGGC- -5'
14064 3' -50.1 NC_003521.1 + 109353 0.66 0.999645
Target:  5'- cGGcgcAGGA--GGCCGAcGAGGCCGAg-- -3'
miRNA:   3'- -CCu--UCCUuuUCGGUU-UUCCGGCUggc -5'
14064 3' -50.1 NC_003521.1 + 52777 0.66 0.999645
Target:  5'- aGGAuGGAGAuGuCCAGgcGGCgGugCGg -3'
miRNA:   3'- -CCUuCCUUUuC-GGUUuuCCGgCugGC- -5'
14064 3' -50.1 NC_003521.1 + 214699 0.66 0.999645
Target:  5'- aGGgcGGAAGcAGCC----GGCCcGCCGa -3'
miRNA:   3'- -CCuuCCUUU-UCGGuuuuCCGGcUGGC- -5'
14064 3' -50.1 NC_003521.1 + 116203 0.66 0.999645
Target:  5'- aGGAGGGAGAcgucGCCGuc--GCCG-CCGc -3'
miRNA:   3'- -CCUUCCUUUu---CGGUuuucCGGCuGGC- -5'
14064 3' -50.1 NC_003521.1 + 110965 0.66 0.999645
Target:  5'- cGGAGGA--AGCgGAcGGGUCGcCCGu -3'
miRNA:   3'- cCUUCCUuuUCGgUUuUCCGGCuGGC- -5'
14064 3' -50.1 NC_003521.1 + 123542 0.66 0.999645
Target:  5'- uGAGGGG--AGCCGGcaccacGGCCGACg- -3'
miRNA:   3'- cCUUCCUuuUCGGUUuu----CCGGCUGgc -5'
14064 3' -50.1 NC_003521.1 + 5823 0.66 0.999645
Target:  5'- ---cGGA--GGCCAGGGGGaCCGcuACCGc -3'
miRNA:   3'- ccuuCCUuuUCGGUUUUCC-GGC--UGGC- -5'
14064 3' -50.1 NC_003521.1 + 31543 0.66 0.999557
Target:  5'- aGGGAcGGuguacuGGAGGCCGAAuGGCgCGuCCGg -3'
miRNA:   3'- -CCUU-CC------UUUUCGGUUUuCCG-GCuGGC- -5'
14064 3' -50.1 NC_003521.1 + 27778 0.66 0.999557
Target:  5'- cGGAGGAAGaaaccuacuccGGCCcgcucGGCCGGCUc -3'
miRNA:   3'- cCUUCCUUU-----------UCGGuuuu-CCGGCUGGc -5'
14064 3' -50.1 NC_003521.1 + 72976 0.66 0.999557
Target:  5'- uGAAGaAGcGGCCGcgGGGGGCCuGGCCGc -3'
miRNA:   3'- cCUUCcUUuUCGGU--UUUCCGG-CUGGC- -5'
14064 3' -50.1 NC_003521.1 + 150528 0.66 0.999557
Target:  5'- aGGAGcGGGAGCCGugGGGuCCGGCgGu -3'
miRNA:   3'- cCUUCcUUUUCGGUuuUCC-GGCUGgC- -5'
14064 3' -50.1 NC_003521.1 + 166999 0.66 0.999557
Target:  5'- aGGgcGGAGuuGGCgUAGAAGGuCCGguuGCCGg -3'
miRNA:   3'- -CCuuCCUUu-UCG-GUUUUCC-GGC---UGGC- -5'
14064 3' -50.1 NC_003521.1 + 113344 0.66 0.999557
Target:  5'- cGGggGGcuu--CCAGGGGGaCgGGCCGg -3'
miRNA:   3'- -CCuuCCuuuucGGUUUUCC-GgCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 6458 0.66 0.999557
Target:  5'- cGGGAGGAGcggaugacGGCaCGGGAGGCaGGuCCGg -3'
miRNA:   3'- -CCUUCCUUu-------UCG-GUUUUCCGgCU-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.