miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14066 3' -54.5 NC_003521.1 + 173013 0.66 0.985485
Target:  5'- ----uGCACGCggaUGCUUUGGAgcacgcgcucGCCGGUg -3'
miRNA:   3'- gagucUGUGCG---GCGAAACCU----------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 103512 0.66 0.985485
Target:  5'- aCUCGGGguCGCCGCgcaGcAGCCGcGCc -3'
miRNA:   3'- -GAGUCUguGCGGCGaaaCcUUGGC-CG- -5'
14066 3' -54.5 NC_003521.1 + 25568 0.66 0.985485
Target:  5'- -gCAGGCG-GCCGCg--GGGACaGGUg -3'
miRNA:   3'- gaGUCUGUgCGGCGaaaCCUUGgCCG- -5'
14066 3' -54.5 NC_003521.1 + 235291 0.66 0.985485
Target:  5'- ---cGACGCGCCGCc----AACUGGCg -3'
miRNA:   3'- gaguCUGUGCGGCGaaaccUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 78514 0.66 0.985485
Target:  5'- -cCGGACACGCgaCGCggauuccgcGGAcucCCGGCg -3'
miRNA:   3'- gaGUCUGUGCG--GCGaaa------CCUu--GGCCG- -5'
14066 3' -54.5 NC_003521.1 + 73010 0.66 0.985485
Target:  5'- gCUCuggcuGACAUG-CGCggUGGuGCUGGCu -3'
miRNA:   3'- -GAGu----CUGUGCgGCGaaACCuUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 117652 0.66 0.985485
Target:  5'- ---cGACuGCGCCGCgagacGGugcGCCGGCc -3'
miRNA:   3'- gaguCUG-UGCGGCGaaa--CCu--UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 96786 0.66 0.985485
Target:  5'- -gCAGAaGCGCCGCagaccGGAACgGGg -3'
miRNA:   3'- gaGUCUgUGCGGCGaaa--CCUUGgCCg -5'
14066 3' -54.5 NC_003521.1 + 175844 0.66 0.985485
Target:  5'- -gCGGcGCACGUCGUcgUGcGAggucACCGGCa -3'
miRNA:   3'- gaGUC-UGUGCGGCGaaAC-CU----UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 27033 0.66 0.985485
Target:  5'- -cCAGGCGCGgCGCa--GGGGCCGa- -3'
miRNA:   3'- gaGUCUGUGCgGCGaaaCCUUGGCcg -5'
14066 3' -54.5 NC_003521.1 + 204869 0.66 0.984456
Target:  5'- uCUCGGGCACGCaggucaaccacacuaCGUccccgUUGaGGACCaGGCg -3'
miRNA:   3'- -GAGUCUGUGCG---------------GCGa----AAC-CUUGG-CCG- -5'
14066 3' -54.5 NC_003521.1 + 112949 0.66 0.984456
Target:  5'- gCUguG-CACGCCGCgcauccuggUGGGcaaccugcccgacggGCUGGCg -3'
miRNA:   3'- -GAguCuGUGCGGCGaa-------ACCU---------------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 101177 0.66 0.98374
Target:  5'- cCUCAGACgGCGuCCGCgc-----CCGGCg -3'
miRNA:   3'- -GAGUCUG-UGC-GGCGaaaccuuGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 49797 0.66 0.98374
Target:  5'- -gCAGACGCuGCCGCccgaauggcUGGGcGCCGuGCa -3'
miRNA:   3'- gaGUCUGUG-CGGCGaa-------ACCU-UGGC-CG- -5'
14066 3' -54.5 NC_003521.1 + 64386 0.66 0.98374
Target:  5'- -gCGGGCGCGuCUGCagaacgUGGAGCgCGGg -3'
miRNA:   3'- gaGUCUGUGC-GGCGaa----ACCUUG-GCCg -5'
14066 3' -54.5 NC_003521.1 + 202172 0.66 0.98374
Target:  5'- --aGGACGCGgaaacggacCCGCg--GGAcacccaGCCGGCg -3'
miRNA:   3'- gagUCUGUGC---------GGCGaaaCCU------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 155998 0.66 0.98374
Target:  5'- --aGGAgGCGCUGCgc--GAGCUGGCc -3'
miRNA:   3'- gagUCUgUGCGGCGaaacCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 225843 0.66 0.98374
Target:  5'- -cCAcGGCGCGCuCGUggUGGuGCgGGCa -3'
miRNA:   3'- gaGU-CUGUGCG-GCGaaACCuUGgCCG- -5'
14066 3' -54.5 NC_003521.1 + 213732 0.66 0.98374
Target:  5'- -cCAGACgGCGCCGCagaaggccgUGGuGgCGGCc -3'
miRNA:   3'- gaGUCUG-UGCGGCGaa-------ACCuUgGCCG- -5'
14066 3' -54.5 NC_003521.1 + 170849 0.66 0.98374
Target:  5'- --gAGACGCGCgucggcuucucCGCg--GGGGCgGGCg -3'
miRNA:   3'- gagUCUGUGCG-----------GCGaaaCCUUGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.