miRNA display CGI


Results 1 - 20 of 507 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14068 3' -60.9 NC_003521.1 + 192312 0.66 0.824587
Target:  5'- gCGGUAGCGGCGUCGgCGGcaCCgUGGg -3'
miRNA:   3'- -GUCGUCGUCGCGGCgGCUucGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 177767 0.66 0.824587
Target:  5'- gGGUcGCGGuCGUCGCCaGGGCCgaCGGg -3'
miRNA:   3'- gUCGuCGUC-GCGGCGGcUUCGGa-GCC- -5'
14068 3' -60.9 NC_003521.1 + 40418 0.66 0.824587
Target:  5'- gGGCGuGCAGgGagGCCGAAGCggCGGc -3'
miRNA:   3'- gUCGU-CGUCgCggCGGCUUCGgaGCC- -5'
14068 3' -60.9 NC_003521.1 + 124616 0.66 0.824587
Target:  5'- aAGCGGCGGCGaCGgCGAcGUCUCc- -3'
miRNA:   3'- gUCGUCGUCGCgGCgGCUuCGGAGcc -5'
14068 3' -60.9 NC_003521.1 + 191146 0.66 0.824587
Target:  5'- aCGGCGaCAGCGCCGCgcucGCC-CGGc -3'
miRNA:   3'- -GUCGUcGUCGCGGCGgcuuCGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 224778 0.66 0.824587
Target:  5'- -uGCAGCAGCGcCCGCaccacGUCgugCGGg -3'
miRNA:   3'- guCGUCGUCGC-GGCGgcuu-CGGa--GCC- -5'
14068 3' -60.9 NC_003521.1 + 59363 0.66 0.824587
Target:  5'- aGGCGGCGcGCcaGCCGCUGGAcGCCgCGc -3'
miRNA:   3'- gUCGUCGU-CG--CGGCGGCUU-CGGaGCc -5'
14068 3' -60.9 NC_003521.1 + 211119 0.66 0.824587
Target:  5'- uCAGCAGCcaGGCGCCGagGAcGCagCGGa -3'
miRNA:   3'- -GUCGUCG--UCGCGGCggCUuCGgaGCC- -5'
14068 3' -60.9 NC_003521.1 + 233719 0.66 0.824587
Target:  5'- uCAGCGGCcuggagaaggaGGaCGCCGCCGccGCgUCu- -3'
miRNA:   3'- -GUCGUCG-----------UC-GCGGCGGCuuCGgAGcc -5'
14068 3' -60.9 NC_003521.1 + 96 0.66 0.824587
Target:  5'- gGGCGuGCAGgGagGCCGAAGCggCGGc -3'
miRNA:   3'- gUCGU-CGUCgCggCGGCUUCGgaGCC- -5'
14068 3' -60.9 NC_003521.1 + 43109 0.66 0.824587
Target:  5'- gAGCuGaccaAGCGCUGCgGcGAGCgCUCGGc -3'
miRNA:   3'- gUCGuCg---UCGCGGCGgC-UUCG-GAGCC- -5'
14068 3' -60.9 NC_003521.1 + 56915 0.66 0.824587
Target:  5'- aCAGCGccGCAGCaCCGCCuccAGCacCUCGGc -3'
miRNA:   3'- -GUCGU--CGUCGcGGCGGcu-UCG--GAGCC- -5'
14068 3' -60.9 NC_003521.1 + 240645 0.66 0.824587
Target:  5'- gGGCGuGCAGgGagGCCGAAGCggCGGc -3'
miRNA:   3'- gUCGU-CGUCgCggCGGCUUCGgaGCC- -5'
14068 3' -60.9 NC_003521.1 + 180108 0.66 0.824587
Target:  5'- gGGCAGCGGCGUggugcgacccgCGCCGcc-CC-CGGg -3'
miRNA:   3'- gUCGUCGUCGCG-----------GCGGCuucGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 110671 0.66 0.824587
Target:  5'- cCGGuCGGcCAGCG-CGUCGGuGGCCUCGa -3'
miRNA:   3'- -GUC-GUC-GUCGCgGCGGCU-UCGGAGCc -5'
14068 3' -60.9 NC_003521.1 + 166485 0.66 0.823786
Target:  5'- -cGCAGCAGCGCCauccagcggggcGCCGcguccgaguugauGAGCgUCa- -3'
miRNA:   3'- guCGUCGUCGCGG------------CGGC-------------UUCGgAGcc -5'
14068 3' -60.9 NC_003521.1 + 166281 0.66 0.823786
Target:  5'- -cGCA-CGGCGCgGCUGGuccgcguGGCCUCGu -3'
miRNA:   3'- guCGUcGUCGCGgCGGCU-------UCGGAGCc -5'
14068 3' -60.9 NC_003521.1 + 50269 0.66 0.823786
Target:  5'- aCGGCgaguacgAGCGGCGCUucacggacauGCCGuuAGGUUUCGGg -3'
miRNA:   3'- -GUCG-------UCGUCGCGG----------CGGC--UUCGGAGCC- -5'
14068 3' -60.9 NC_003521.1 + 118086 0.66 0.82218
Target:  5'- uCAGCcacucGGCGGCGCCGUCGcccacgaccacgaccGCCUCc- -3'
miRNA:   3'- -GUCG-----UCGUCGCGGCGGCuu-------------CGGAGcc -5'
14068 3' -60.9 NC_003521.1 + 186954 0.66 0.816509
Target:  5'- -cGCAGCAGgcacucguacaCGCCgGCCGAGgacGCCgucgcgCGGa -3'
miRNA:   3'- guCGUCGUC-----------GCGG-CGGCUU---CGGa-----GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.