miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14071 5' -55.2 NC_003521.1 + 193321 0.66 0.97593
Target:  5'- -gGGCACG-GUGGgGGUGGUc--GCCu -3'
miRNA:   3'- gaUCGUGCuCGCCgCCAUCGucaUGG- -5'
14071 5' -55.2 NC_003521.1 + 119593 0.66 0.97593
Target:  5'- --cGCugG-GCGGCGGgugcAGCGucucGUGCUg -3'
miRNA:   3'- gauCGugCuCGCCGCCa---UCGU----CAUGG- -5'
14071 5' -55.2 NC_003521.1 + 14933 0.66 0.97593
Target:  5'- -gAGCGCGAGCGGC---AGC---GCCa -3'
miRNA:   3'- gaUCGUGCUCGCCGccaUCGucaUGG- -5'
14071 5' -55.2 NC_003521.1 + 34332 0.66 0.97593
Target:  5'- --cGUugGaAGCGGCGcagGGCGGagGCCg -3'
miRNA:   3'- gauCGugC-UCGCCGCca-UCGUCa-UGG- -5'
14071 5' -55.2 NC_003521.1 + 98227 0.66 0.97593
Target:  5'- -cGGCGUGGGaGGCGGggaGGCGGgggcgGCCa -3'
miRNA:   3'- gaUCGUGCUCgCCGCCa--UCGUCa----UGG- -5'
14071 5' -55.2 NC_003521.1 + 87139 0.66 0.97593
Target:  5'- -gAGCGCGAgGUGuuggaGCGGgcGCAGUucgugcgcgcgGCCg -3'
miRNA:   3'- gaUCGUGCU-CGC-----CGCCauCGUCA-----------UGG- -5'
14071 5' -55.2 NC_003521.1 + 31089 0.66 0.97593
Target:  5'- -cAGCgACGA-CGGCGGcGGcCGGUACa -3'
miRNA:   3'- gaUCG-UGCUcGCCGCCaUC-GUCAUGg -5'
14071 5' -55.2 NC_003521.1 + 118929 0.66 0.97593
Target:  5'- -cGGCGUGGGCGGCGGcgucccGuCAGgGCCa -3'
miRNA:   3'- gaUCGUGCUCGCCGCCau----C-GUCaUGG- -5'
14071 5' -55.2 NC_003521.1 + 164741 0.66 0.97593
Target:  5'- -cAGCGCGGGaGGgGGgcaucGCGGUcGCCg -3'
miRNA:   3'- gaUCGUGCUCgCCgCCau---CGUCA-UGG- -5'
14071 5' -55.2 NC_003521.1 + 37004 0.66 0.973404
Target:  5'- -gAGgGCGucGCGGCGG-AGuCAGgACCg -3'
miRNA:   3'- gaUCgUGCu-CGCCGCCaUC-GUCaUGG- -5'
14071 5' -55.2 NC_003521.1 + 216239 0.66 0.973404
Target:  5'- -aGGCcuACGAGCGGgaGGUGGacgAGgagGCCg -3'
miRNA:   3'- gaUCG--UGCUCGCCg-CCAUCg--UCa--UGG- -5'
14071 5' -55.2 NC_003521.1 + 136867 0.66 0.973404
Target:  5'- --uGCACGGacucGCGGCGgGUGGC---GCCg -3'
miRNA:   3'- gauCGUGCU----CGCCGC-CAUCGucaUGG- -5'
14071 5' -55.2 NC_003521.1 + 198373 0.66 0.973404
Target:  5'- gUAGCGCcGGaCGGCGuuGUGGCGGgcgGCg -3'
miRNA:   3'- gAUCGUGcUC-GCCGC--CAUCGUCa--UGg -5'
14071 5' -55.2 NC_003521.1 + 213021 0.66 0.973404
Target:  5'- aUGGCGcCGGGCGaGcCGGccgAGCGG-GCCg -3'
miRNA:   3'- gAUCGU-GCUCGC-C-GCCa--UCGUCaUGG- -5'
14071 5' -55.2 NC_003521.1 + 127305 0.66 0.973404
Target:  5'- gUGGCGCGccucgauguuGGCGuuGGUcAGCGGcUGCCg -3'
miRNA:   3'- gAUCGUGC----------UCGCcgCCA-UCGUC-AUGG- -5'
14071 5' -55.2 NC_003521.1 + 102756 0.66 0.972877
Target:  5'- -cAGCGCcucagcuguccGCGGCGGUcGCGGgcgACCc -3'
miRNA:   3'- gaUCGUGcu---------CGCCGCCAuCGUCa--UGG- -5'
14071 5' -55.2 NC_003521.1 + 132438 0.66 0.971799
Target:  5'- --cGCugGuAGCGGUGGUGGgcuguucggcgcgucCGGUcaGCCg -3'
miRNA:   3'- gauCGugC-UCGCCGCCAUC---------------GUCA--UGG- -5'
14071 5' -55.2 NC_003521.1 + 124853 0.66 0.971799
Target:  5'- --cGCGCcauggguccguugaaGAGCGGCGGcAGCAG-GCa -3'
miRNA:   3'- gauCGUG---------------CUCGCCGCCaUCGUCaUGg -5'
14071 5' -55.2 NC_003521.1 + 163160 0.66 0.970691
Target:  5'- -----cUGAGCGGUGGUGGCAGc--- -3'
miRNA:   3'- gaucguGCUCGCCGCCAUCGUCaugg -5'
14071 5' -55.2 NC_003521.1 + 19179 0.66 0.970691
Target:  5'- cCUGGCuacaccGCGGGCGGCG--AGCuaagGCCa -3'
miRNA:   3'- -GAUCG------UGCUCGCCGCcaUCGuca-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.