miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 103059 0.66 0.980078
Target:  5'- uGCAGAcagggcgGGUGCGCGGGCgagggcugcUGCuggggaugcgaagggGGCGGa -3'
miRNA:   3'- gCGUCU-------UUACGUGCCUGa--------GCG---------------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 118728 0.66 0.979656
Target:  5'- gCGCGGcaccgGCACGGGCUgcagguugcuggugaGuCGGCGGc -3'
miRNA:   3'- -GCGUCuuua-CGUGCCUGAg--------------C-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 123169 0.66 0.979443
Target:  5'- uGCuGAGGUG-GCGG-Cg-GCGGCGGg -3'
miRNA:   3'- gCGuCUUUACgUGCCuGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 65703 0.66 0.979443
Target:  5'- gGCaAGAAGgacaGCGGcGC-CGCGGCGGc -3'
miRNA:   3'- gCG-UCUUUacg-UGCC-UGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 181648 0.66 0.979443
Target:  5'- aGcCAGAAGcgggGCAUGGug-CGCGGgGGa -3'
miRNA:   3'- gC-GUCUUUa---CGUGCCugaGCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 165094 0.66 0.979443
Target:  5'- aGCAcGAAUGCuguugaGGAacaGCGGCGGc -3'
miRNA:   3'- gCGUcUUUACGug----CCUgagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 117310 0.66 0.979443
Target:  5'- aCGCGGAu---UGCGGGCggcaGCGGCGa -3'
miRNA:   3'- -GCGUCUuuacGUGCCUGag--CGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 163184 0.66 0.979443
Target:  5'- aGCGGcAGcgGaCACGGuGgUgGCGGCGGc -3'
miRNA:   3'- gCGUC-UUuaC-GUGCC-UgAgCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 187584 0.66 0.979227
Target:  5'- cCGCGGggGcuucgccgGCggucgcuucgcccGCGGACUCcCGGCGa -3'
miRNA:   3'- -GCGUCuuUa-------CG-------------UGCCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 122673 0.66 0.978792
Target:  5'- gCGguGggGUGgcgucgccggugauCAUGGGCgUCuCGGCGGg -3'
miRNA:   3'- -GCguCuuUAC--------------GUGCCUG-AGcGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 98463 0.66 0.977215
Target:  5'- uGgAGGAGgcgGCgGCGG-C-CGCGGCGGc -3'
miRNA:   3'- gCgUCUUUa--CG-UGCCuGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 40029 0.66 0.977215
Target:  5'- aGCGGAAAgucgGUGUGGA-UCGCGGaCGGc -3'
miRNA:   3'- gCGUCUUUa---CGUGCCUgAGCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 240257 0.66 0.977215
Target:  5'- aGCGGAAAgucgGUGUGGA-UCGCGGaCGGc -3'
miRNA:   3'- gCGUCUUUa---CGUGCCUgAGCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 70259 0.66 0.977215
Target:  5'- uGguGggGUgcaGCACGGGCaggCGCaGGuCGGc -3'
miRNA:   3'- gCguCuuUA---CGUGCCUGa--GCG-CC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 180045 0.66 0.977215
Target:  5'- gGUAGAAAUGgGaagaGGAg--GCGGCGGg -3'
miRNA:   3'- gCGUCUUUACgUg---CCUgagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 152007 0.66 0.977215
Target:  5'- aGCgAGAAGUGCAucagguuguCGGGCUucaccaggcCGCaGCGGu -3'
miRNA:   3'- gCG-UCUUUACGU---------GCCUGA---------GCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 35782 0.66 0.977215
Target:  5'- gCGCAGAcggacgaaacgGAUcCAuCGGGCgUCGCGGCa- -3'
miRNA:   3'- -GCGUCU-----------UUAcGU-GCCUG-AGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 31576 0.66 0.977215
Target:  5'- uCGCGGGAcacgcugGCACGGAUacgggagaugUCGUccaccgucagguGGCGGa -3'
miRNA:   3'- -GCGUCUUua-----CGUGCCUG----------AGCG------------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 50534 0.66 0.977215
Target:  5'- cCGCGGGGuu-CGCGGcaguaUCGCaGGCGGa -3'
miRNA:   3'- -GCGUCUUuacGUGCCug---AGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 18648 0.66 0.977215
Target:  5'- gCGUGGGGccGCACGGACcUGCuGGCcacGGg -3'
miRNA:   3'- -GCGUCUUuaCGUGCCUGaGCG-CCG---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.