miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 3' -50.7 NC_003521.1 + 197569 0.66 0.999398
Target:  5'- aCGCAgGAUGGCGAUgAGGCGgaUGGAGc- -3'
miRNA:   3'- gGUGU-CUGCUGCUG-UCUGC--ACCUUua -5'
14089 3' -50.7 NC_003521.1 + 27982 0.66 0.999398
Target:  5'- cUCACGGccACGGCGGCAG-CGUGa---- -3'
miRNA:   3'- -GGUGUC--UGCUGCUGUCuGCACcuuua -5'
14089 3' -50.7 NC_003521.1 + 91917 0.66 0.999398
Target:  5'- uCCA-GGACGGCGGCGGcgauGCgGUGGAc-- -3'
miRNA:   3'- -GGUgUCUGCUGCUGUC----UG-CACCUuua -5'
14089 3' -50.7 NC_003521.1 + 69779 0.66 0.999398
Target:  5'- aCCACGG-CGACGAgGGAgcggcCGUcGAGAUg -3'
miRNA:   3'- -GGUGUCuGCUGCUgUCU-----GCAcCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 166852 0.66 0.999398
Target:  5'- aCGCAGGCGguggcGCGGCGGGCGcaGGucGUa -3'
miRNA:   3'- gGUGUCUGC-----UGCUGUCUGCa-CCuuUA- -5'
14089 3' -50.7 NC_003521.1 + 116885 0.66 0.999398
Target:  5'- gCGCGGcuGCGGCGGCGcgccGGCG-GGAGAc -3'
miRNA:   3'- gGUGUC--UGCUGCUGU----CUGCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 86703 0.66 0.999262
Target:  5'- gCCGCGG-CGGCGAC-GACGaGGcgGUg -3'
miRNA:   3'- -GGUGUCuGCUGCUGuCUGCaCCuuUA- -5'
14089 3' -50.7 NC_003521.1 + 74244 0.66 0.999262
Target:  5'- -gACGGugGACGACGGGuuCcUGGAGu- -3'
miRNA:   3'- ggUGUCugCUGCUGUCU--GcACCUUua -5'
14089 3' -50.7 NC_003521.1 + 91669 0.66 0.999262
Target:  5'- -gACGGACGACGAgguggccaCGGcguCGUGGAu-- -3'
miRNA:   3'- ggUGUCUGCUGCU--------GUCu--GCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 111177 0.66 0.999262
Target:  5'- gCCGCcccGGCGACGGCgccgcGGACgGUGGGc-- -3'
miRNA:   3'- -GGUGu--CUGCUGCUG-----UCUG-CACCUuua -5'
14089 3' -50.7 NC_003521.1 + 77864 0.66 0.999262
Target:  5'- -gACGGGCGAUGGCGccGGCcucguaGUGGAAGUu -3'
miRNA:   3'- ggUGUCUGCUGCUGU--CUG------CACCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 43132 0.66 0.999262
Target:  5'- gCGCu--CGGCGcUGGGCGUGGAGGUg -3'
miRNA:   3'- gGUGucuGCUGCuGUCUGCACCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 87638 0.66 0.999262
Target:  5'- gCCGCAGGCcuCGcACAGGC-UGGAGGc -3'
miRNA:   3'- -GGUGUCUGcuGC-UGUCUGcACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 7614 0.66 0.999262
Target:  5'- gUACGGugG-CGGCGGACuGUcGGGAAc -3'
miRNA:   3'- gGUGUCugCuGCUGUCUG-CA-CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 39867 0.66 0.999262
Target:  5'- uCCAgAGACGGCGAuCGGGCGccguacaGGGu-- -3'
miRNA:   3'- -GGUgUCUGCUGCU-GUCUGCa------CCUuua -5'
14089 3' -50.7 NC_003521.1 + 109869 0.66 0.999217
Target:  5'- -gACGGGCGGCGGCGGggccaccaguaacuGCGUGcGAc-- -3'
miRNA:   3'- ggUGUCUGCUGCUGUC--------------UGCAC-CUuua -5'
14089 3' -50.7 NC_003521.1 + 236173 0.66 0.999101
Target:  5'- aCCuaGCGGACGAUGGguGGgGUGGcAGGa -3'
miRNA:   3'- -GG--UGUCUGCUGCUguCUgCACC-UUUa -5'
14089 3' -50.7 NC_003521.1 + 238454 0.66 0.999101
Target:  5'- gCGCAgGGCGGCcucGGCGGGCGgggcGGAGAc -3'
miRNA:   3'- gGUGU-CUGCUG---CUGUCUGCa---CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 133228 0.66 0.999101
Target:  5'- uUCAgGGGCGAUGGCGGuCGaGGAc-- -3'
miRNA:   3'- -GGUgUCUGCUGCUGUCuGCaCCUuua -5'
14089 3' -50.7 NC_003521.1 + 38226 0.66 0.999101
Target:  5'- gCGCAgGGCGGCcucGGCGGGCGgggcGGAGAc -3'
miRNA:   3'- gGUGU-CUGCUG---CUGUCUGCa---CCUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.