miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 3' -57.1 NC_003521.1 + 38912 0.66 0.930497
Target:  5'- gCGUCCCCGcccUGuGUCGUgGCGGCAGUa -3'
miRNA:   3'- -GUAGGGGUuc-ACcCGGUA-CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 209710 0.66 0.930497
Target:  5'- aCAggcgCUCCAGGUccgagGaGGUCGUGC-GCAGCg -3'
miRNA:   3'- -GUa---GGGGUUCA-----C-CCGGUACGuCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 148402 0.66 0.930497
Target:  5'- gGUCCacgugCGAG-GGaGCCAUGguGCGGg -3'
miRNA:   3'- gUAGGg----GUUCaCC-CGGUACguCGUCg -5'
14094 3' -57.1 NC_003521.1 + 108771 0.66 0.930497
Target:  5'- --aCCCUAGGcgcUGaGGCgCG-GCAGCAGCc -3'
miRNA:   3'- guaGGGGUUC---AC-CCG-GUaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 75782 0.66 0.930497
Target:  5'- --cCUCCAGGUGcagacGCC--GCGGCAGCa -3'
miRNA:   3'- guaGGGGUUCACc----CGGuaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 140947 0.66 0.930497
Target:  5'- --cCCCUAcauggagacGGUGGccGCCAUGCGcCAGCu -3'
miRNA:   3'- guaGGGGU---------UCACC--CGGUACGUcGUCG- -5'
14094 3' -57.1 NC_003521.1 + 223451 0.66 0.930497
Target:  5'- gGUCCCUcucGAGUcuGGGCCGccGCGcCGGCg -3'
miRNA:   3'- gUAGGGG---UUCA--CCCGGUa-CGUcGUCG- -5'
14094 3' -57.1 NC_003521.1 + 87749 0.66 0.930497
Target:  5'- --gCCCCGGcccGGGCCccgGCGGCGGa -3'
miRNA:   3'- guaGGGGUUca-CCCGGua-CGUCGUCg -5'
14094 3' -57.1 NC_003521.1 + 7948 0.66 0.930497
Target:  5'- uCAUCCuCCAgaucgccgcGGUGucgcGGCCGggaggguccGCGGCGGCg -3'
miRNA:   3'- -GUAGG-GGU---------UCAC----CCGGUa--------CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 152099 0.66 0.927433
Target:  5'- gGUCUCCAgcagaaacacGGUGGaguaGCCcacgaagcuggucccGUGCAGCAGUu -3'
miRNA:   3'- gUAGGGGU----------UCACC----CGG---------------UACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 181647 0.66 0.927433
Target:  5'- aCGUCUCCugacugcccgcGGcGCCGUGCcGCAGCu -3'
miRNA:   3'- -GUAGGGGuuca-------CC-CGGUACGuCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 186913 0.66 0.925345
Target:  5'- aCGUCCaaGGGgGGcGCCGguggcggggGCGGCGGCg -3'
miRNA:   3'- -GUAGGggUUCaCC-CGGUa--------CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 153297 0.66 0.925345
Target:  5'- --gCCCUgcGUGguGGUCAUGCAGUcGCg -3'
miRNA:   3'- guaGGGGuuCAC--CCGGUACGUCGuCG- -5'
14094 3' -57.1 NC_003521.1 + 224031 0.66 0.925345
Target:  5'- --gCCCCAuaaUGGGCgCcgGCAGCAu- -3'
miRNA:   3'- guaGGGGUuc-ACCCG-GuaCGUCGUcg -5'
14094 3' -57.1 NC_003521.1 + 5489 0.66 0.924817
Target:  5'- -uUCCCCccuuAGaucuGGCCGUcucggcaggaguaGCAGCAGCg -3'
miRNA:   3'- guAGGGGu---UCac--CCGGUA-------------CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 74162 0.66 0.919965
Target:  5'- ---gCCCAGGUGccgcuGGCCGacUGCGccGCGGCg -3'
miRNA:   3'- guagGGGUUCAC-----CCGGU--ACGU--CGUCG- -5'
14094 3' -57.1 NC_003521.1 + 46737 0.66 0.919965
Target:  5'- uCGUgCCCCA---GGGCCcc-CAGCAGCu -3'
miRNA:   3'- -GUA-GGGGUucaCCCGGuacGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 29233 0.66 0.919965
Target:  5'- gAUCCUCuacUGGGCCuccaGCcGCGGCg -3'
miRNA:   3'- gUAGGGGuucACCCGGua--CGuCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 18914 0.66 0.919965
Target:  5'- --gCCCCGaagGGUGGcGCCGcGCGcCGGCa -3'
miRNA:   3'- guaGGGGU---UCACC-CGGUaCGUcGUCG- -5'
14094 3' -57.1 NC_003521.1 + 101126 0.66 0.919965
Target:  5'- gAUCCCCGugcuGGCCAaucgcgUGCuGCAGUa -3'
miRNA:   3'- gUAGGGGUucacCCGGU------ACGuCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.