miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 5' -57.9 NC_003521.1 + 136819 0.66 0.918083
Target:  5'- cGACCCcggcgUGCGCAuGUacuacgccgucuucaCCACCcugGGCCu -3'
miRNA:   3'- aCUGGG-----ACGUGUuCAg--------------GGUGGa--CCGG- -5'
14094 5' -57.9 NC_003521.1 + 80994 0.66 0.917533
Target:  5'- cGGCCCuucuccuuggUGUGCAuGUCCCGCagcaccuugacgCUGGUCu -3'
miRNA:   3'- aCUGGG----------ACGUGUuCAGGGUG------------GACCGG- -5'
14094 5' -57.9 NC_003521.1 + 1192 0.66 0.917533
Target:  5'- cGGCCUgUGCcaACAGGaCCagcugUACCUGGCCc -3'
miRNA:   3'- aCUGGG-ACG--UGUUCaGG-----GUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 122486 0.66 0.917533
Target:  5'- aUGuCCUUGgGCGGGUUCUGCagGGCCa -3'
miRNA:   3'- -ACuGGGACgUGUUCAGGGUGgaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 114676 0.66 0.917533
Target:  5'- cGACaa-GCGCGAcg-CCGCCUGGCCc -3'
miRNA:   3'- aCUGggaCGUGUUcagGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 201420 0.66 0.917533
Target:  5'- cGGCCUgUGCcaACAGGaCCagcugUACCUGGCCc -3'
miRNA:   3'- aCUGGG-ACG--UGUUCaGG-----GUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 223836 0.66 0.917533
Target:  5'- gGGCgCCUGCu---GUCCCugC-GGCUg -3'
miRNA:   3'- aCUG-GGACGuguuCAGGGugGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 161011 0.66 0.917533
Target:  5'- cGACCuCUGU-CAGGUUCCGCUc-GCCg -3'
miRNA:   3'- aCUGG-GACGuGUUCAGGGUGGacCGG- -5'
14094 5' -57.9 NC_003521.1 + 137456 0.66 0.91698
Target:  5'- -uGCCCgacacggucugcgUGCACuacgUCUACCUGGCCu -3'
miRNA:   3'- acUGGG-------------ACGUGuucaGGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 33085 0.66 0.912483
Target:  5'- aUGGCCuuCUGCACGGGcUCCagccaGCCgaugacggcguagcgGGCCu -3'
miRNA:   3'- -ACUGG--GACGUGUUC-AGGg----UGGa--------------CCGG- -5'
14094 5' -57.9 NC_003521.1 + 194803 0.66 0.911911
Target:  5'- gUGGCCCUuCACGG--UgCugCUGGCCg -3'
miRNA:   3'- -ACUGGGAcGUGUUcaGgGugGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 68331 0.66 0.911911
Target:  5'- --cCCCUGgACGAGgauuccuaUCCCGCCgacGGCg -3'
miRNA:   3'- acuGGGACgUGUUC--------AGGGUGGa--CCGg -5'
14094 5' -57.9 NC_003521.1 + 197335 0.66 0.911911
Target:  5'- aGGCCCUGgGCGAGgucaucggcUCCUuCgUGGCg -3'
miRNA:   3'- aCUGGGACgUGUUC---------AGGGuGgACCGg -5'
14094 5' -57.9 NC_003521.1 + 24628 0.66 0.911911
Target:  5'- gGACCCcGCGCcGGUgCUCAgcgccuucguCCUGGCg -3'
miRNA:   3'- aCUGGGaCGUGuUCA-GGGU----------GGACCGg -5'
14094 5' -57.9 NC_003521.1 + 77136 0.66 0.911911
Target:  5'- cGGCCUUGCgcuGCGAGaCCCACUUGuugaGCa -3'
miRNA:   3'- aCUGGGACG---UGUUCaGGGUGGAC----CGg -5'
14094 5' -57.9 NC_003521.1 + 141936 0.66 0.911911
Target:  5'- cUGACCgUGCAgCGcguGGgcgCCCACCUgcugGGCg -3'
miRNA:   3'- -ACUGGgACGU-GU---UCa--GGGUGGA----CCGg -5'
14094 5' -57.9 NC_003521.1 + 68269 0.66 0.911911
Target:  5'- cGACCCcgggacagcgGCACGAGauccCCCGCCUgacGGUg -3'
miRNA:   3'- aCUGGGa---------CGUGUUCa---GGGUGGA---CCGg -5'
14094 5' -57.9 NC_003521.1 + 24810 0.66 0.911911
Target:  5'- gGGCCCUGCGCuugcuGGUgggcuucuacaCCACCaugGGCa -3'
miRNA:   3'- aCUGGGACGUGu----UCAg----------GGUGGa--CCGg -5'
14094 5' -57.9 NC_003521.1 + 88548 0.66 0.911911
Target:  5'- cGGCCUccucgGgGCAGGgcaCCAgCUGGCCc -3'
miRNA:   3'- aCUGGGa----CgUGUUCag-GGUgGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 106315 0.66 0.911911
Target:  5'- cGGCCgUGCGCAucgCCUGCCUcauccGCCa -3'
miRNA:   3'- aCUGGgACGUGUucaGGGUGGAc----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.