miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 3' -60.7 NC_003521.1 + 229087 0.66 0.816698
Target:  5'- gGGCCCGUCgaugaCGGCcGACUcGCCGa -3'
miRNA:   3'- -CCGGGCGGaag--GUCGuCUGGaCGGUg -5'
14096 3' -60.7 NC_003521.1 + 4629 0.66 0.816698
Target:  5'- -aCCCGCUccgUCGGCuuuCCUGCCACc -3'
miRNA:   3'- ccGGGCGGaa-GGUCGucuGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 75776 0.66 0.816698
Target:  5'- aGG-CCGCC-UCCAgguGCAGAC--GCCGCg -3'
miRNA:   3'- -CCgGGCGGaAGGU---CGUCUGgaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 218879 0.66 0.816698
Target:  5'- cGCUCGCCcacuagcUCCAGCccgAGGCCgcccGCCAg -3'
miRNA:   3'- cCGGGCGGa------AGGUCG---UCUGGa---CGGUg -5'
14096 3' -60.7 NC_003521.1 + 172292 0.66 0.816698
Target:  5'- cGGCCgcUGCCgccgUCCGGUgucgguggcgccAGGCCgGUCGCg -3'
miRNA:   3'- -CCGG--GCGGa---AGGUCG------------UCUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 72646 0.66 0.816698
Target:  5'- gGGCCagcaGCUcaUCAcGCAGACUaUGCCGCa -3'
miRNA:   3'- -CCGGg---CGGaaGGU-CGUCUGG-ACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 212947 0.66 0.816698
Target:  5'- aGCCCGCC-UCCAuGCGGucgagguccuCCgUGCCGu -3'
miRNA:   3'- cCGGGCGGaAGGU-CGUCu---------GG-ACGGUg -5'
14096 3' -60.7 NC_003521.1 + 25356 0.66 0.816698
Target:  5'- uGGCCuuCGCCUUCgUGGCucccucGGCCUGgCGCc -3'
miRNA:   3'- -CCGG--GCGGAAG-GUCGu-----CUGGACgGUG- -5'
14096 3' -60.7 NC_003521.1 + 148888 0.66 0.816698
Target:  5'- gGGUCCGCCgccgggUCCAccGCAucGCC-GCCGCc -3'
miRNA:   3'- -CCGGGCGGa-----AGGU--CGUc-UGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 73083 0.66 0.815876
Target:  5'- aGCuCCGCCggCCAccGCAGcgccacgcaauccACCgugGCCACg -3'
miRNA:   3'- cCG-GGCGGaaGGU--CGUC-------------UGGa--CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 138450 0.66 0.815876
Target:  5'- -cCCCGCgCgugcaucgCCGGCGGcgccacaucugccACCUGCCGCc -3'
miRNA:   3'- ccGGGCG-Gaa------GGUCGUC-------------UGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 205180 0.66 0.815876
Target:  5'- cGCCUGCCgcUCgCAGCgcgugcgGGACCUGCgaaACg -3'
miRNA:   3'- cCGGGCGGa-AG-GUCG-------UCUGGACGg--UG- -5'
14096 3' -60.7 NC_003521.1 + 183520 0.66 0.80841
Target:  5'- gGGCCCucGCUUaUCCAccagucgccgcGCAccGACCUGCUGCu -3'
miRNA:   3'- -CCGGG--CGGA-AGGU-----------CGU--CUGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 21548 0.66 0.80841
Target:  5'- gGGCCCGCUcaugugCCAGCcccugcGGGcCCUGCUc- -3'
miRNA:   3'- -CCGGGCGGaa----GGUCG------UCU-GGACGGug -5'
14096 3' -60.7 NC_003521.1 + 222165 0.66 0.80841
Target:  5'- cGCCC-CCguggCCAGCAGGuCCgUGCgGCc -3'
miRNA:   3'- cCGGGcGGaa--GGUCGUCU-GG-ACGgUG- -5'
14096 3' -60.7 NC_003521.1 + 37819 0.66 0.80841
Target:  5'- -aCCCGUCUU--GGCGGGCgaGCCGCc -3'
miRNA:   3'- ccGGGCGGAAggUCGUCUGgaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 85341 0.66 0.80841
Target:  5'- cGGCCCGCCgcaggCCGGCGucUCUcUCACc -3'
miRNA:   3'- -CCGGGCGGaa---GGUCGUcuGGAcGGUG- -5'
14096 3' -60.7 NC_003521.1 + 39581 0.66 0.80841
Target:  5'- aGuCCUGCCggcgUCGGCGGuCCUGCCc- -3'
miRNA:   3'- cC-GGGCGGaa--GGUCGUCuGGACGGug -5'
14096 3' -60.7 NC_003521.1 + 73296 0.66 0.80841
Target:  5'- cGGCaggaCGCCg---AGCAGACCUGgCUGCu -3'
miRNA:   3'- -CCGg---GCGGaaggUCGUCUGGAC-GGUG- -5'
14096 3' -60.7 NC_003521.1 + 101053 0.66 0.80841
Target:  5'- uGGCggCCGCCga-CGGcCGGAuCCUGCCGu -3'
miRNA:   3'- -CCG--GGCGGaagGUC-GUCU-GGACGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.