miRNA display CGI


Results 1 - 20 of 272 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 103842 0.66 0.949663
Target:  5'- gGGGCCGCGuCUcgGC-CUcguccaggcuggcgaUCAGCGCCg -3'
miRNA:   3'- -UCUGGUGCuGGa-CGaGA---------------AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 97274 0.66 0.94803
Target:  5'- cGAUgGCGGCugCUGCUCgucgccggCGGCGCgCg -3'
miRNA:   3'- uCUGgUGCUG--GACGAGaa------GUCGCGgG- -5'
14096 5' -56.9 NC_003521.1 + 112427 0.66 0.94803
Target:  5'- cGGACCgACG-CCcGCUCa--GGCgGCCCa -3'
miRNA:   3'- -UCUGG-UGCuGGaCGAGaagUCG-CGGG- -5'
14096 5' -56.9 NC_003521.1 + 152591 0.66 0.94803
Target:  5'- uGGAguaCACGAUg-GcCUCcUCGGCGCCCu -3'
miRNA:   3'- -UCUg--GUGCUGgaC-GAGaAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 182011 0.66 0.94803
Target:  5'- -cGCCACGcgcuGCCUGCUCgagaccgUCuauGCGUCg -3'
miRNA:   3'- ucUGGUGC----UGGACGAGa------AGu--CGCGGg -5'
14096 5' -56.9 NC_003521.1 + 129118 0.66 0.94803
Target:  5'- cGGCgCACGGaCUGgaCgUCGGCGUCCg -3'
miRNA:   3'- uCUG-GUGCUgGACgaGaAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 46253 0.66 0.94803
Target:  5'- uGGGCaGCGGCCcaaGCUaUUUCgacgaGGCGCCCg -3'
miRNA:   3'- -UCUGgUGCUGGa--CGA-GAAG-----UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 144832 0.66 0.947616
Target:  5'- aGGGCUuucGCaACCUGCcCUUCAcgguccuGCGCCUg -3'
miRNA:   3'- -UCUGG---UGcUGGACGaGAAGU-------CGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 121007 0.66 0.947616
Target:  5'- cGGAgCCGCugcuccaGACCUcCUCggCGGCGCCg -3'
miRNA:   3'- -UCU-GGUG-------CUGGAcGAGaaGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 21514 0.66 0.946361
Target:  5'- uGGGCUACuGCCUGCccaacacgcuggcCUUCAuGgGCCCg -3'
miRNA:   3'- -UCUGGUGcUGGACGa------------GAAGU-CgCGGG- -5'
14096 5' -56.9 NC_003521.1 + 92034 0.66 0.943794
Target:  5'- cGuCCGCaGCCgcgGCUCcUCGGCGCgaCCg -3'
miRNA:   3'- uCuGGUGcUGGa--CGAGaAGUCGCG--GG- -5'
14096 5' -56.9 NC_003521.1 + 167962 0.66 0.943794
Target:  5'- uGACgACGACCgccgUGC-CUaccgUCGccGCGCCCa -3'
miRNA:   3'- uCUGgUGCUGG----ACGaGA----AGU--CGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 204029 0.66 0.943794
Target:  5'- cGuCCGCGAgCgGCUCcgCAGCGCg- -3'
miRNA:   3'- uCuGGUGCUgGaCGAGaaGUCGCGgg -5'
14096 5' -56.9 NC_003521.1 + 166238 0.66 0.943794
Target:  5'- cGGCCGCGggacgccgcGCCgccGCUCcgUCGcCGCCCu -3'
miRNA:   3'- uCUGGUGC---------UGGa--CGAGa-AGUcGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 87777 0.66 0.943794
Target:  5'- cAGGCCAgGGCCaggUGCUgaggcccgUAGCGCUCa -3'
miRNA:   3'- -UCUGGUgCUGG---ACGAgaa-----GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 149064 0.66 0.943794
Target:  5'- uGGGCUucgacGCGGCCgcGCUCUcgCA-CGCCCu -3'
miRNA:   3'- -UCUGG-----UGCUGGa-CGAGAa-GUcGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 102831 0.66 0.943794
Target:  5'- -cGCCGagauCGACCUGCgcgCggacaCAGCGCaCCa -3'
miRNA:   3'- ucUGGU----GCUGGACGa--Gaa---GUCGCG-GG- -5'
14096 5' -56.9 NC_003521.1 + 59819 0.66 0.943794
Target:  5'- uGGACCGCGugCUGCUCauguacuacUUCuacaCGCaCUa -3'
miRNA:   3'- -UCUGGUGCugGACGAG---------AAGuc--GCG-GG- -5'
14096 5' -56.9 NC_003521.1 + 127993 0.66 0.943358
Target:  5'- uGACCACGAaguCCUGCUUcaucucgUUCAccGUGCgCg -3'
miRNA:   3'- uCUGGUGCU---GGACGAG-------AAGU--CGCGgG- -5'
14096 5' -56.9 NC_003521.1 + 130302 0.66 0.941147
Target:  5'- gAGGCCGCGGcgccgcgcauCCagguccacuacaagcUGCUCUUCGG-GCUCa -3'
miRNA:   3'- -UCUGGUGCU----------GG---------------ACGAGAAGUCgCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.