Results 1 - 20 of 272 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14096 | 5' | -56.9 | NC_003521.1 | + | 103842 | 0.66 | 0.949663 |
Target: 5'- gGGGCCGCGuCUcgGC-CUcguccaggcuggcgaUCAGCGCCg -3' miRNA: 3'- -UCUGGUGCuGGa-CGaGA---------------AGUCGCGGg -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 129118 | 0.66 | 0.94803 |
Target: 5'- cGGCgCACGGaCUGgaCgUCGGCGUCCg -3' miRNA: 3'- uCUG-GUGCUgGACgaGaAGUCGCGGG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 112427 | 0.66 | 0.94803 |
Target: 5'- cGGACCgACG-CCcGCUCa--GGCgGCCCa -3' miRNA: 3'- -UCUGG-UGCuGGaCGAGaagUCG-CGGG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 46253 | 0.66 | 0.94803 |
Target: 5'- uGGGCaGCGGCCcaaGCUaUUUCgacgaGGCGCCCg -3' miRNA: 3'- -UCUGgUGCUGGa--CGA-GAAG-----UCGCGGG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 182011 | 0.66 | 0.94803 |
Target: 5'- -cGCCACGcgcuGCCUGCUCgagaccgUCuauGCGUCg -3' miRNA: 3'- ucUGGUGC----UGGACGAGa------AGu--CGCGGg -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 97274 | 0.66 | 0.94803 |
Target: 5'- cGAUgGCGGCugCUGCUCgucgccggCGGCGCgCg -3' miRNA: 3'- uCUGgUGCUG--GACGAGaa------GUCGCGgG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 152591 | 0.66 | 0.94803 |
Target: 5'- uGGAguaCACGAUg-GcCUCcUCGGCGCCCu -3' miRNA: 3'- -UCUg--GUGCUGgaC-GAGaAGUCGCGGG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 121007 | 0.66 | 0.947616 |
Target: 5'- cGGAgCCGCugcuccaGACCUcCUCggCGGCGCCg -3' miRNA: 3'- -UCU-GGUG-------CUGGAcGAGaaGUCGCGGg -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 144832 | 0.66 | 0.947616 |
Target: 5'- aGGGCUuucGCaACCUGCcCUUCAcgguccuGCGCCUg -3' miRNA: 3'- -UCUGG---UGcUGGACGaGAAGU-------CGCGGG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 21514 | 0.66 | 0.946361 |
Target: 5'- uGGGCUACuGCCUGCccaacacgcuggcCUUCAuGgGCCCg -3' miRNA: 3'- -UCUGGUGcUGGACGa------------GAAGU-CgCGGG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 92034 | 0.66 | 0.943794 |
Target: 5'- cGuCCGCaGCCgcgGCUCcUCGGCGCgaCCg -3' miRNA: 3'- uCuGGUGcUGGa--CGAGaAGUCGCG--GG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 102831 | 0.66 | 0.943794 |
Target: 5'- -cGCCGagauCGACCUGCgcgCggacaCAGCGCaCCa -3' miRNA: 3'- ucUGGU----GCUGGACGa--Gaa---GUCGCG-GG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 204029 | 0.66 | 0.943794 |
Target: 5'- cGuCCGCGAgCgGCUCcgCAGCGCg- -3' miRNA: 3'- uCuGGUGCUgGaCGAGaaGUCGCGgg -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 87777 | 0.66 | 0.943794 |
Target: 5'- cAGGCCAgGGCCaggUGCUgaggcccgUAGCGCUCa -3' miRNA: 3'- -UCUGGUgCUGG---ACGAgaa-----GUCGCGGG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 166238 | 0.66 | 0.943794 |
Target: 5'- cGGCCGCGggacgccgcGCCgccGCUCcgUCGcCGCCCu -3' miRNA: 3'- uCUGGUGC---------UGGa--CGAGa-AGUcGCGGG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 59819 | 0.66 | 0.943794 |
Target: 5'- uGGACCGCGugCUGCUCauguacuacUUCuacaCGCaCUa -3' miRNA: 3'- -UCUGGUGCugGACGAG---------AAGuc--GCG-GG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 167962 | 0.66 | 0.943794 |
Target: 5'- uGACgACGACCgccgUGC-CUaccgUCGccGCGCCCa -3' miRNA: 3'- uCUGgUGCUGG----ACGaGA----AGU--CGCGGG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 149064 | 0.66 | 0.943794 |
Target: 5'- uGGGCUucgacGCGGCCgcGCUCUcgCA-CGCCCu -3' miRNA: 3'- -UCUGG-----UGCUGGa-CGAGAa-GUcGCGGG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 127993 | 0.66 | 0.943358 |
Target: 5'- uGACCACGAaguCCUGCUUcaucucgUUCAccGUGCgCg -3' miRNA: 3'- uCUGGUGCU---GGACGAG-------AAGU--CGCGgG- -5' |
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14096 | 5' | -56.9 | NC_003521.1 | + | 130302 | 0.66 | 0.941147 |
Target: 5'- gAGGCCGCGGcgccgcgcauCCagguccacuacaagcUGCUCUUCGG-GCUCa -3' miRNA: 3'- -UCUGGUGCU----------GG---------------ACGAGAAGUCgCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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