miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14100 5' -59.1 NC_003521.1 + 197371 0.65 0.894841
Target:  5'- gGCCCGCUgugagagUUCCagGGcCGCCGcCGCCUc- -3'
miRNA:   3'- -CGGGUGA-------AAGG--CC-GCGGUaGCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 84881 0.66 0.891686
Target:  5'- cGCCCGg--UCCGGguggcgcgaguaggcCGUCAgCGCCCGGu -3'
miRNA:   3'- -CGGGUgaaAGGCC---------------GCGGUaGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 238898 0.66 0.889124
Target:  5'- cGUCCugcgguCUggCuCGGCGCCAUC-CCCGa -3'
miRNA:   3'- -CGGGu-----GAaaG-GCCGCGGUAGcGGGUc -5'
14100 5' -59.1 NC_003521.1 + 74583 0.66 0.889124
Target:  5'- gGCCCGCUcgCCgGGCGgCAUcaCGCUCu- -3'
miRNA:   3'- -CGGGUGAaaGG-CCGCgGUA--GCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 74724 0.66 0.889124
Target:  5'- gGCCCGCgugaaccugCCGGCccgcucccGCUAUgGCCCu- -3'
miRNA:   3'- -CGGGUGaaa------GGCCG--------CGGUAgCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 89708 0.66 0.889124
Target:  5'- cCCCAUaUUCCcccCGCCAUCcCCCAGc -3'
miRNA:   3'- cGGGUGaAAGGcc-GCGGUAGcGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 111693 0.66 0.889124
Target:  5'- -aCCACgcagUCGGaCGCCGaCGUCCAGu -3'
miRNA:   3'- cgGGUGaaa-GGCC-GCGGUaGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 226841 0.66 0.889124
Target:  5'- cGCCCGCcg-CC-GCGCCGggcagGCCCAu -3'
miRNA:   3'- -CGGGUGaaaGGcCGCGGUag---CGGGUc -5'
14100 5' -59.1 NC_003521.1 + 141501 0.66 0.889124
Target:  5'- uGCCCAC---CUGGCccGCC-UCGuCCCGGa -3'
miRNA:   3'- -CGGGUGaaaGGCCG--CGGuAGC-GGGUC- -5'
14100 5' -59.1 NC_003521.1 + 116537 0.66 0.889124
Target:  5'- cGCCgCGCUUUCUGGagaucgucaGCCG-CGCCUc- -3'
miRNA:   3'- -CGG-GUGAAAGGCCg--------CGGUaGCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 212736 0.66 0.889124
Target:  5'- cGCCUGCUcggcUUCCc-CGCCGUCGUCCu- -3'
miRNA:   3'- -CGGGUGA----AAGGccGCGGUAGCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 38671 0.66 0.889124
Target:  5'- cGUCCugcgguCUggCuCGGCGCCAUC-CCCGa -3'
miRNA:   3'- -CGGGu-----GAaaG-GCCGCGGUAGcGGGUc -5'
14100 5' -59.1 NC_003521.1 + 129708 0.66 0.889124
Target:  5'- cGCCCGCUUcugCCGGCcGCg---GCCCGu -3'
miRNA:   3'- -CGGGUGAAa--GGCCG-CGguagCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 17096 0.66 0.889124
Target:  5'- uCCCGCca-CCGGaccCGCCGUCGuaCCCGGc -3'
miRNA:   3'- cGGGUGaaaGGCC---GCGGUAGC--GGGUC- -5'
14100 5' -59.1 NC_003521.1 + 53840 0.66 0.888479
Target:  5'- cGCUgACUUUCCgcgcgacGGCGUCcUCGgCCGGc -3'
miRNA:   3'- -CGGgUGAAAGG-------CCGCGGuAGCgGGUC- -5'
14100 5' -59.1 NC_003521.1 + 203382 0.66 0.888479
Target:  5'- aGCCCACagcgUCaccuucagaggcuCGGCGCCG-CGCCaCAc -3'
miRNA:   3'- -CGGGUGaa--AG-------------GCCGCGGUaGCGG-GUc -5'
14100 5' -59.1 NC_003521.1 + 187581 0.66 0.887831
Target:  5'- aGUCCGCgggggcuucgCCGGCgGUCGcuUCGCCCGc -3'
miRNA:   3'- -CGGGUGaaa-------GGCCG-CGGU--AGCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 117616 0.66 0.882578
Target:  5'- cGCCCcCguccuacCCGGCGCCGUaugcgGCCUAc -3'
miRNA:   3'- -CGGGuGaaa----GGCCGCGGUAg----CGGGUc -5'
14100 5' -59.1 NC_003521.1 + 127733 0.66 0.882578
Target:  5'- cGCUC-CUgcacCCGGCgGCCGUCugcgccucguaGCCCGGa -3'
miRNA:   3'- -CGGGuGAaa--GGCCG-CGGUAG-----------CGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 192398 0.66 0.882578
Target:  5'- aGCUgACggugcugUUCCaGCGCC-UCGCCgAGa -3'
miRNA:   3'- -CGGgUGa------AAGGcCGCGGuAGCGGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.