miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14105 3' -56 NC_003521.1 + 42557 0.66 0.948959
Target:  5'- cGACGCCCggcugGCUGUccGGCGGC-Cg -3'
miRNA:   3'- -UUGCGGGaaauaCGACGc-CCGCUGuG- -5'
14105 3' -56 NC_003521.1 + 155652 0.66 0.944663
Target:  5'- aAGCGCC----GUGCUGgGuGGCGGCGg -3'
miRNA:   3'- -UUGCGGgaaaUACGACgC-CCGCUGUg -5'
14105 3' -56 NC_003521.1 + 105211 0.66 0.944663
Target:  5'- -cCGCCCgcga-GCUGCGcGGCGuCAa -3'
miRNA:   3'- uuGCGGGaaauaCGACGC-CCGCuGUg -5'
14105 3' -56 NC_003521.1 + 17004 0.66 0.944663
Target:  5'- aGGCGCCCgcg--GUgGCGG-CGGCGCa -3'
miRNA:   3'- -UUGCGGGaaauaCGaCGCCcGCUGUG- -5'
14105 3' -56 NC_003521.1 + 198374 0.66 0.944663
Target:  5'- uAGCGCCggacg-GCguugugGCGGGCGGCGa -3'
miRNA:   3'- -UUGCGGgaaauaCGa-----CGCCCGCUGUg -5'
14105 3' -56 NC_003521.1 + 159093 0.66 0.944663
Target:  5'- gGugGCCUUUU-UGgaGCgGGGCGACu- -3'
miRNA:   3'- -UugCGGGAAAuACgaCG-CCCGCUGug -5'
14105 3' -56 NC_003521.1 + 141172 0.66 0.944221
Target:  5'- cAugGCCUacgUGUGCUccuuuucGCGGGUGGC-Cg -3'
miRNA:   3'- -UugCGGGaa-AUACGA-------CGCCCGCUGuG- -5'
14105 3' -56 NC_003521.1 + 170492 0.66 0.94333
Target:  5'- cAACGCCCUgcugGacggcgucaccgccUcGCUGCuGGGCGACcuGCa -3'
miRNA:   3'- -UUGCGGGAaa--U--------------A-CGACG-CCCGCUG--UG- -5'
14105 3' -56 NC_003521.1 + 13856 0.66 0.940601
Target:  5'- cGGCGCgggggucuCUGCGGGCGGCGCc -3'
miRNA:   3'- -UUGCGggaaauacGACGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 122199 0.66 0.940138
Target:  5'- cGACGCCCUcgcgacuccAUGCUGCcuGCGAgCGCg -3'
miRNA:   3'- -UUGCGGGAaa-------UACGACGccCGCU-GUG- -5'
14105 3' -56 NC_003521.1 + 43886 0.66 0.940138
Target:  5'- -uCGCCCacgcuaccgGUGCUGCcGGUGACGa -3'
miRNA:   3'- uuGCGGGaaa------UACGACGcCCGCUGUg -5'
14105 3' -56 NC_003521.1 + 235198 0.66 0.940138
Target:  5'- cACGCCCU--GUGgUGCGacuGCGACGa -3'
miRNA:   3'- uUGCGGGAaaUACgACGCc--CGCUGUg -5'
14105 3' -56 NC_003521.1 + 132410 0.66 0.940138
Target:  5'- aGACGCUgUUUcgcCUGUGcGGCGACGCc -3'
miRNA:   3'- -UUGCGGgAAAuacGACGC-CCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 127359 0.66 0.938735
Target:  5'- cACGCCCUccgugGUGCgcgGCaggugcgugaugaaGGGCGGcCACa -3'
miRNA:   3'- uUGCGGGAaa---UACGa--CG--------------CCCGCU-GUG- -5'
14105 3' -56 NC_003521.1 + 226871 0.66 0.937311
Target:  5'- gGGCGUCCagcgagggcaGCUGCGGG-GGCACc -3'
miRNA:   3'- -UUGCGGGaaaua-----CGACGCCCgCUGUG- -5'
14105 3' -56 NC_003521.1 + 118911 0.66 0.93538
Target:  5'- -uCGCCCUcgUcgGCgccgcggcGUGGGCGGCGg -3'
miRNA:   3'- uuGCGGGAa-AuaCGa-------CGCCCGCUGUg -5'
14105 3' -56 NC_003521.1 + 168984 0.66 0.93538
Target:  5'- cGACGCgCgucgGUcGCgggagGCGGGCGACGg -3'
miRNA:   3'- -UUGCGgGaaa-UA-CGa----CGCCCGCUGUg -5'
14105 3' -56 NC_003521.1 + 130277 0.66 0.93538
Target:  5'- gGGCGCCCUcuccgGCUaccUGGGCGAgGCc -3'
miRNA:   3'- -UUGCGGGAaaua-CGAc--GCCCGCUgUG- -5'
14105 3' -56 NC_003521.1 + 144041 0.66 0.93538
Target:  5'- uAGCGCCgccgcUGCUGCcGGCGGCGa -3'
miRNA:   3'- -UUGCGGgaaauACGACGcCCGCUGUg -5'
14105 3' -56 NC_003521.1 + 207192 0.66 0.933412
Target:  5'- -cCGCCCcuccacggccUGUUGCuGGGCGACAg -3'
miRNA:   3'- uuGCGGGaaau------ACGACG-CCCGCUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.