miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 3' -53.9 NC_003521.1 + 100567 0.66 0.992828
Target:  5'- cCCUCGGCGUccgacUUACCGcCGUaggGGCCg -3'
miRNA:   3'- -GGAGCUGCAcaa--GAUGGUcGCA---CCGG- -5'
14108 3' -53.9 NC_003521.1 + 171054 0.66 0.992828
Target:  5'- cCCUCGucgcCGUGguaUGCCgucAGUGcGGCCa -3'
miRNA:   3'- -GGAGCu---GCACaagAUGG---UCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 64484 0.66 0.992828
Target:  5'- --gUGACGUaaGUaCUGCCuauagauauaGGCGUGGCUa -3'
miRNA:   3'- ggaGCUGCA--CAaGAUGG----------UCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 11726 0.66 0.992828
Target:  5'- uCUUCGAgcaGUUCUACCAcgGUuUGGCCa -3'
miRNA:   3'- -GGAGCUgcaCAAGAUGGU--CGcACCGG- -5'
14108 3' -53.9 NC_003521.1 + 120042 0.66 0.991821
Target:  5'- aCC-CGGcCGUGUUCaccuggccCCAGUGgcaGGCCg -3'
miRNA:   3'- -GGaGCU-GCACAAGau------GGUCGCa--CCGG- -5'
14108 3' -53.9 NC_003521.1 + 122489 0.66 0.991715
Target:  5'- uCCUUgGGCGgGUUCUGCagggccaacgcggCGGCGggcaGGCCg -3'
miRNA:   3'- -GGAG-CUGCaCAAGAUG-------------GUCGCa---CCGG- -5'
14108 3' -53.9 NC_003521.1 + 233758 0.66 0.991715
Target:  5'- gCUCGuagaUGUUUUGCUuuuuacuGGCGUGGCUg -3'
miRNA:   3'- gGAGCugc-ACAAGAUGG-------UCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 75161 0.66 0.990705
Target:  5'- gCCUgGACGcaUGg--UGCCAGCGcGGCg -3'
miRNA:   3'- -GGAgCUGC--ACaagAUGGUCGCaCCGg -5'
14108 3' -53.9 NC_003521.1 + 176613 0.66 0.990705
Target:  5'- uCCUCG-CG----CUGCU-GCGUGGCCa -3'
miRNA:   3'- -GGAGCuGCacaaGAUGGuCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 169287 0.66 0.990705
Target:  5'- uCUUCGGCGgcgggcucgGUgacgUCgGCCGGCGUcGGUCg -3'
miRNA:   3'- -GGAGCUGCa--------CA----AGaUGGUCGCA-CCGG- -5'
14108 3' -53.9 NC_003521.1 + 77648 0.66 0.990705
Target:  5'- -aUCGACGUGUUggaaCUGCCGuCGggagacagcaGGCCg -3'
miRNA:   3'- ggAGCUGCACAA----GAUGGUcGCa---------CCGG- -5'
14108 3' -53.9 NC_003521.1 + 72387 0.66 0.990705
Target:  5'- aCUCGGCGUccucgUCgaucACCAGCGgcggaGGCa -3'
miRNA:   3'- gGAGCUGCAca---AGa---UGGUCGCa----CCGg -5'
14108 3' -53.9 NC_003521.1 + 83258 0.66 0.990469
Target:  5'- uCCUUGGCGUGggggagcacGCCugcguuaucgcaGGCGUaGGCCa -3'
miRNA:   3'- -GGAGCUGCACaaga-----UGG------------UCGCA-CCGG- -5'
14108 3' -53.9 NC_003521.1 + 129219 0.66 0.989473
Target:  5'- --gCGugGUGggCaguCCGGCGccgcUGGCCa -3'
miRNA:   3'- ggaGCugCACaaGau-GGUCGC----ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 22309 0.66 0.989473
Target:  5'- aCCUUcACGg--UCUGCCuGC-UGGCCu -3'
miRNA:   3'- -GGAGcUGCacaAGAUGGuCGcACCGG- -5'
14108 3' -53.9 NC_003521.1 + 16207 0.66 0.989473
Target:  5'- cCUUCGAgGUGgcggcgccCUGCC-GCcUGGCCg -3'
miRNA:   3'- -GGAGCUgCACaa------GAUGGuCGcACCGG- -5'
14108 3' -53.9 NC_003521.1 + 48628 0.66 0.988946
Target:  5'- uCCgcCGACGaaacccaaACCGGUGUGGCCg -3'
miRNA:   3'- -GGa-GCUGCacaaga--UGGUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 37649 0.66 0.988117
Target:  5'- aUCUgGugGUGgcauUCUGCCGGCacgacgGGCa -3'
miRNA:   3'- -GGAgCugCACa---AGAUGGUCGca----CCGg -5'
14108 3' -53.9 NC_003521.1 + 5530 0.66 0.988117
Target:  5'- --gCGACG-GUgacggCaGCCGGCGcGGCCg -3'
miRNA:   3'- ggaGCUGCaCAa----GaUGGUCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 77157 0.66 0.988117
Target:  5'- aUUCGugGUGguggugaUGCUgagaaggcuGCGUGGCCa -3'
miRNA:   3'- gGAGCugCACaag----AUGGu--------CGCACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.