miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 5' -60.5 NC_003521.1 + 52824 0.66 0.870935
Target:  5'- -aGGAGACGgCGGUGGagaucgacagcaUCgACGACuGGu -3'
miRNA:   3'- caCCUCUGCgGCCGCC------------AG-UGCUGcCC- -5'
14108 5' -60.5 NC_003521.1 + 38457 0.66 0.870935
Target:  5'- cUGGAGcAgGUCGGCGG-C-CGugGGa -3'
miRNA:   3'- cACCUC-UgCGGCCGCCaGuGCugCCc -5'
14108 5' -60.5 NC_003521.1 + 173027 0.66 0.870935
Target:  5'- uUGGAGcacgcgcuCGCCGGUGGgcagCugGGucUGGGu -3'
miRNA:   3'- cACCUCu-------GCGGCCGCCa---GugCU--GCCC- -5'
14108 5' -60.5 NC_003521.1 + 103648 0.66 0.870935
Target:  5'- -cGGGGGCagcucggcggcgGCCGcugcggccGCGGcCAUGGCGGGc -3'
miRNA:   3'- caCCUCUG------------CGGC--------CGCCaGUGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 170885 0.66 0.870935
Target:  5'- gGUGGucAGGCGuCCGGCG-UCGCGAagcaGGc -3'
miRNA:   3'- -CACC--UCUGC-GGCCGCcAGUGCUg---CCc -5'
14108 5' -60.5 NC_003521.1 + 92014 0.66 0.870935
Target:  5'- -gGcGAGGCG-CGGCGGcgGCGGCGGu -3'
miRNA:   3'- caC-CUCUGCgGCCGCCagUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 238684 0.66 0.870935
Target:  5'- cUGGAGcAgGUCGGCGG-C-CGugGGa -3'
miRNA:   3'- cACCUC-UgCGGCCGCCaGuGCugCCc -5'
14108 5' -60.5 NC_003521.1 + 136883 0.66 0.870935
Target:  5'- -gGGuGGCGCCGGUGuUCGCGGuCGa- -3'
miRNA:   3'- caCCuCUGCGGCCGCcAGUGCU-GCcc -5'
14108 5' -60.5 NC_003521.1 + 87255 0.66 0.870253
Target:  5'- gGUGGAGcggcuguGCGCCGuGCGcGUgGCcaACGGGc -3'
miRNA:   3'- -CACCUC-------UGCGGC-CGC-CAgUGc-UGCCC- -5'
14108 5' -60.5 NC_003521.1 + 161204 0.66 0.866814
Target:  5'- --cGAGGCGCC-GCGGUCGCcccggcaaguucgauGGCGGcGg -3'
miRNA:   3'- cacCUCUGCGGcCGCCAGUG---------------CUGCC-C- -5'
14108 5' -60.5 NC_003521.1 + 63872 0.66 0.86403
Target:  5'- -cGGuGGACGa-GGCGG-CGCGcCGGGa -3'
miRNA:   3'- caCC-UCUGCggCCGCCaGUGCuGCCC- -5'
14108 5' -60.5 NC_003521.1 + 170513 0.66 0.86403
Target:  5'- -gGGAGACaugaCGGCGuGUgACGgggACGGGg -3'
miRNA:   3'- caCCUCUGcg--GCCGC-CAgUGC---UGCCC- -5'
14108 5' -60.5 NC_003521.1 + 129874 0.66 0.86403
Target:  5'- aGUGGGuGACgGCCGGggaggaggaGGaCgACGACGGGg -3'
miRNA:   3'- -CACCU-CUG-CGGCCg--------CCaG-UGCUGCCC- -5'
14108 5' -60.5 NC_003521.1 + 187487 0.66 0.86403
Target:  5'- -----cGCGCCGGCgugguGGUCACGACGa- -3'
miRNA:   3'- caccucUGCGGCCG-----CCAGUGCUGCcc -5'
14108 5' -60.5 NC_003521.1 + 193177 0.66 0.86403
Target:  5'- -aGGA---GCCGGCGGgaGCGGCGGa -3'
miRNA:   3'- caCCUcugCGGCCGCCagUGCUGCCc -5'
14108 5' -60.5 NC_003521.1 + 36947 0.66 0.86403
Target:  5'- aUGGGcccGACGCUGGUcGUCGCaGCGGa -3'
miRNA:   3'- cACCU---CUGCGGCCGcCAGUGcUGCCc -5'
14108 5' -60.5 NC_003521.1 + 192313 0.66 0.86403
Target:  5'- -cGGuagcGGCGUCGGCGG-CACcGugGGu -3'
miRNA:   3'- caCCu---CUGCGGCCGCCaGUG-CugCCc -5'
14108 5' -60.5 NC_003521.1 + 47030 0.66 0.856946
Target:  5'- aUGG-GGCGCUGGUaGUCGCGcAUGGu -3'
miRNA:   3'- cACCuCUGCGGCCGcCAGUGC-UGCCc -5'
14108 5' -60.5 NC_003521.1 + 130742 0.66 0.856946
Target:  5'- aGUcGGGACGUguCGGCGGgCGCGAgcgccgcgcCGGGg -3'
miRNA:   3'- -CAcCUCUGCG--GCCGCCaGUGCU---------GCCC- -5'
14108 5' -60.5 NC_003521.1 + 74228 0.66 0.856946
Target:  5'- -aGGccgucGGCGCCGuGaCGGUgGaCGACGGGu -3'
miRNA:   3'- caCCu----CUGCGGC-C-GCCAgU-GCUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.