miRNA display CGI


Results 1 - 20 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14111 5' -58.5 NC_003521.1 + 109635 0.65 0.940908
Target:  5'- cGCCGuaGCGGGcgaacaugaGACG-CGAgaugaugcagacguAGCGGCGGa -3'
miRNA:   3'- cCGGC--UGCUC---------CUGCuGCU--------------UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 86891 0.66 0.9396
Target:  5'- cGGCgCGGCG-GGugGcCGAGgaguggaagcugcacGCGGCGc -3'
miRNA:   3'- -CCG-GCUGCuCCugCuGCUU---------------CGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 84419 0.66 0.937827
Target:  5'- aGGUgaccagCGGC-AGGGUGGCGAAGCGGCc- -3'
miRNA:   3'- -CCG------GCUGcUCCUGCUGCUUCGCCGcc -5'
14111 5' -58.5 NC_003521.1 + 168059 0.66 0.937827
Target:  5'- cGCCGACGgcGGGugcuCGA-GAcGCGGgGGg -3'
miRNA:   3'- cCGGCUGC--UCCu---GCUgCUuCGCCgCC- -5'
14111 5' -58.5 NC_003521.1 + 136255 0.66 0.937827
Target:  5'- cGGCCGcuACGccGACGugauucAgGAGGUGGUGGa -3'
miRNA:   3'- -CCGGC--UGCucCUGC------UgCUUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 64603 0.66 0.937827
Target:  5'- cGGCUGGCGcGGGACGACacgcuuCGGCc- -3'
miRNA:   3'- -CCGGCUGC-UCCUGCUGcuuc--GCCGcc -5'
14111 5' -58.5 NC_003521.1 + 169192 0.66 0.937827
Target:  5'- -cCCGG-GAGGugGACG-GGCGG-GGa -3'
miRNA:   3'- ccGGCUgCUCCugCUGCuUCGCCgCC- -5'
14111 5' -58.5 NC_003521.1 + 198779 0.66 0.937827
Target:  5'- cGUgGGCGAGGuggguagcagcuGCGugGugccGGCGGCGu -3'
miRNA:   3'- cCGgCUGCUCC------------UGCugCu---UCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 186837 0.66 0.937827
Target:  5'- cGGuCCuGCGAauGGCGGCccAGCGGCGGc -3'
miRNA:   3'- -CC-GGcUGCUc-CUGCUGcuUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 120498 0.66 0.937827
Target:  5'- aGGCgcgUGugGGGGACGACGuggcuuuuuauaGAcaccccccgagcGCGGUGGc -3'
miRNA:   3'- -CCG---GCugCUCCUGCUGC------------UU------------CGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 136715 0.66 0.937827
Target:  5'- cGCCGcCGAGGAUGGC--AGCGcGCc- -3'
miRNA:   3'- cCGGCuGCUCCUGCUGcuUCGC-CGcc -5'
14111 5' -58.5 NC_003521.1 + 91353 0.66 0.937827
Target:  5'- uGGUCGG-GAGGACGGUGggGgaGGgGGc -3'
miRNA:   3'- -CCGGCUgCUCCUGCUGCuuCg-CCgCC- -5'
14111 5' -58.5 NC_003521.1 + 17223 0.66 0.937827
Target:  5'- aGGCCGAgGucucGGAgGcCGAGGUGGaGGc -3'
miRNA:   3'- -CCGGCUgCu---CCUgCuGCUUCGCCgCC- -5'
14111 5' -58.5 NC_003521.1 + 102273 0.66 0.937827
Target:  5'- uGCUGACGAcGugGuuGAAGC-GCGGc -3'
miRNA:   3'- cCGGCUGCUcCugCugCUUCGcCGCC- -5'
14111 5' -58.5 NC_003521.1 + 197837 0.66 0.937827
Target:  5'- cGGCCGucugcagguCGucGGugGGCGc--CGGCGGg -3'
miRNA:   3'- -CCGGCu--------GCu-CCugCUGCuucGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 201898 0.66 0.937827
Target:  5'- cGCCGAUGAc--CGAacaGcAGGCGGCGGc -3'
miRNA:   3'- cCGGCUGCUccuGCUg--C-UUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 169663 0.66 0.937378
Target:  5'- cGCCGAagaggcaGAGGA-GGCaacagcagaggagGAGGCGGCGa -3'
miRNA:   3'- cCGGCUg------CUCCUgCUG-------------CUUCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 186927 0.66 0.937378
Target:  5'- cGCCGgugGCGGGGGCGGCGGcgaacgcaacucgAGCaGCu- -3'
miRNA:   3'- cCGGC---UGCUCCUGCUGCU-------------UCGcCGcc -5'
14111 5' -58.5 NC_003521.1 + 169928 0.66 0.937378
Target:  5'- gGGCCGACGGGuuuaccuGACGugGuuGgGuaGGu -3'
miRNA:   3'- -CCGGCUGCUC-------CUGCugCuuCgCcgCC- -5'
14111 5' -58.5 NC_003521.1 + 44940 0.66 0.937378
Target:  5'- aGGCUGACGcugGGGAUGggcagucccgagaGCGAGGCGacaGCGc -3'
miRNA:   3'- -CCGGCUGC---UCCUGC-------------UGCUUCGC---CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.