miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14120 3' -55.8 NC_003521.1 + 76391 0.66 0.965198
Target:  5'- cGCGGCGcc--CUCCACCUU-GCCGAUg -3'
miRNA:   3'- -UGUCGCuuguGGGGUGGAAgUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 205981 0.66 0.965198
Target:  5'- gGCGGCucucacuCGCCCUACCUgcUgACCGAg -3'
miRNA:   3'- -UGUCGcuu----GUGGGGUGGA--AgUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 197681 0.66 0.965198
Target:  5'- cCAGCGcguGCACCUCcacGCCcagCGCCGAg -3'
miRNA:   3'- uGUCGCu--UGUGGGG---UGGaa-GUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 167187 0.66 0.965198
Target:  5'- cGCGGCGGAgGCCUUcuGCUUggGCUGGCa -3'
miRNA:   3'- -UGUCGCUUgUGGGG--UGGAagUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 137264 0.66 0.965198
Target:  5'- gGCAGCGGGCagagcggggGCCCCagcgACCUggagCugCGGg -3'
miRNA:   3'- -UGUCGCUUG---------UGGGG----UGGAa---GugGCUg -5'
14120 3' -55.8 NC_003521.1 + 236141 0.66 0.965198
Target:  5'- gACGGgGGGgACCgCGCgacgUCGCCGGCg -3'
miRNA:   3'- -UGUCgCUUgUGGgGUGga--AGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 187302 0.66 0.965198
Target:  5'- -gAGCGGACAgCaCCAUCggccgCugCGACg -3'
miRNA:   3'- ugUCGCUUGUgG-GGUGGaa---GugGCUG- -5'
14120 3' -55.8 NC_003521.1 + 149543 0.66 0.965198
Target:  5'- gGCGGCGcGCGCUCCuucuUCUUCcCCGGu -3'
miRNA:   3'- -UGUCGCuUGUGGGGu---GGAAGuGGCUg -5'
14120 3' -55.8 NC_003521.1 + 232363 0.66 0.96488
Target:  5'- cGCGGCG-GCACCgcgaagcggagguCCACCgucucgCGCUGGCu -3'
miRNA:   3'- -UGUCGCuUGUGG-------------GGUGGaa----GUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 7210 0.66 0.96456
Target:  5'- uGCccuCGAGCACCCCGCCggagaucauggCGCCGu- -3'
miRNA:   3'- -UGuc-GCUUGUGGGGUGGaa---------GUGGCug -5'
14120 3' -55.8 NC_003521.1 + 182980 0.66 0.961926
Target:  5'- aGCAGCGAcgGCGuuCgGCg-UCACCGGCc -3'
miRNA:   3'- -UGUCGCU--UGUggGgUGgaAGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 225277 0.66 0.961926
Target:  5'- -aGGUGGGCGCCCCcUCUUC-CCaGCg -3'
miRNA:   3'- ugUCGCUUGUGGGGuGGAAGuGGcUG- -5'
14120 3' -55.8 NC_003521.1 + 152182 0.66 0.961926
Target:  5'- uCGGCGAcuggaccgucuGCACCCaCAgccggucguCCUUCACCGu- -3'
miRNA:   3'- uGUCGCU-----------UGUGGG-GU---------GGAAGUGGCug -5'
14120 3' -55.8 NC_003521.1 + 35759 0.66 0.961926
Target:  5'- uGCGGCuGGACGCUCCACagcgugCGCaGACg -3'
miRNA:   3'- -UGUCG-CUUGUGGGGUGgaa---GUGgCUG- -5'
14120 3' -55.8 NC_003521.1 + 201691 0.66 0.961926
Target:  5'- gGCAGCacacGGGCAUCCCGCUgcagaCGCCcgGACg -3'
miRNA:   3'- -UGUCG----CUUGUGGGGUGGaa---GUGG--CUG- -5'
14120 3' -55.8 NC_003521.1 + 57405 0.66 0.961926
Target:  5'- cACAGCGccguGCGguCgCCCACCgucUCGCgGACg -3'
miRNA:   3'- -UGUCGCu---UGU--G-GGGUGGa--AGUGgCUG- -5'
14120 3' -55.8 NC_003521.1 + 124169 0.66 0.961926
Target:  5'- uGCAgGCGAuaGCGCCUgugCGCCU--GCCGGCu -3'
miRNA:   3'- -UGU-CGCU--UGUGGG---GUGGAagUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 49138 0.66 0.961926
Target:  5'- aACAcGCaGACGCCUCGCCguccUCGgCGACc -3'
miRNA:   3'- -UGU-CGcUUGUGGGGUGGa---AGUgGCUG- -5'
14120 3' -55.8 NC_003521.1 + 59927 0.66 0.961926
Target:  5'- -aGGUGGGC-UCCCACCUcUCGCUGGa -3'
miRNA:   3'- ugUCGCUUGuGGGGUGGA-AGUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 1464 0.66 0.961926
Target:  5'- gGCAGCacacGGGCAUCCCGCUgcagaCGCCcgGACg -3'
miRNA:   3'- -UGUCG----CUUGUGGGGUGGaa---GUGG--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.