miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 91261 0.66 0.733378
Target:  5'- gGGCACGgGCGGgaAaccggggaagaagaaGGagcgcgCGCCGCCCg -3'
miRNA:   3'- -UCGUGCaCGCCgaUg--------------CCg-----GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 66581 0.66 0.732472
Target:  5'- cGCaACGUGCGucugaGCUccgACGcGCCcCUGCCCg -3'
miRNA:   3'- uCG-UGCACGC-----CGA---UGC-CGGcGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 53502 0.66 0.732472
Target:  5'- aGGC-CGcugcUGCGGCgucgcaGCGGCCgaugguGCUGUCCg -3'
miRNA:   3'- -UCGuGC----ACGCCGa-----UGCCGG------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 24189 0.66 0.732472
Target:  5'- aAGC-CGgGCGGCauggGCGGaaCGUCGUCCa -3'
miRNA:   3'- -UCGuGCaCGCCGa---UGCCg-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 225175 0.66 0.732472
Target:  5'- cGGCGCuGUGCuGCcgcucgaagAUGGCCuugaaGUCGCCCa -3'
miRNA:   3'- -UCGUG-CACGcCGa--------UGCCGG-----CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 31245 0.66 0.732472
Target:  5'- cGCuACGUGCGcCccCGGacCCGCCGCCa -3'
miRNA:   3'- uCG-UGCACGCcGauGCC--GGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 193305 0.66 0.732472
Target:  5'- gGGaCACGcUGCucaGCUACGGCUGCaucgcgGUCCg -3'
miRNA:   3'- -UC-GUGC-ACGc--CGAUGCCGGCGg-----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 78188 0.66 0.732472
Target:  5'- uGGCgaaacgGCGUGCGGa-GCGGgCGCggCGCUCg -3'
miRNA:   3'- -UCG------UGCACGCCgaUGCCgGCG--GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 216121 0.66 0.732472
Target:  5'- gAGCGCGgcGCGGa---GGCCGCgGCa- -3'
miRNA:   3'- -UCGUGCa-CGCCgaugCCGGCGgCGgg -5'
14136 3' -63.3 NC_003521.1 + 70139 0.66 0.732472
Target:  5'- gGGCcuCGagcUGCGGCgagcGCGGCUGCCuaUCa -3'
miRNA:   3'- -UCGu-GC---ACGCCGa---UGCCGGCGGcgGG- -5'
14136 3' -63.3 NC_003521.1 + 77454 0.66 0.732472
Target:  5'- cGUugGUGCccGUgacACuGCCGCCGCCg -3'
miRNA:   3'- uCGugCACGc-CGa--UGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 149619 0.66 0.732472
Target:  5'- uGCGCGaaaCGGCgcUGGaCGCCGCCg -3'
miRNA:   3'- uCGUGCac-GCCGauGCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 104574 0.66 0.732472
Target:  5'- -uCACGU-CGGCguaGCGGCCGgCGUgCg -3'
miRNA:   3'- ucGUGCAcGCCGa--UGCCGGCgGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 240109 0.66 0.732472
Target:  5'- uGCACGuUGgGGUggGCGuGCgGUCGUCCc -3'
miRNA:   3'- uCGUGC-ACgCCGa-UGC-CGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 118087 0.66 0.732472
Target:  5'- cAGCcacuCG-GCGGC----GCCGUCGCCCa -3'
miRNA:   3'- -UCGu---GCaCGCCGaugcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 129897 0.66 0.732472
Target:  5'- gAGgACGacGaCGGg-GCGGCCGCgCGCCUg -3'
miRNA:   3'- -UCgUGCa-C-GCCgaUGCCGGCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 39882 0.66 0.732472
Target:  5'- uGCACGuUGgGGUggGCGuGCgGUCGUCCc -3'
miRNA:   3'- uCGUGC-ACgCCGa-UGC-CGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 165878 0.66 0.732472
Target:  5'- uGCACGUGCucgGGCgGCGGguacaccacccCgCGCUGCCg -3'
miRNA:   3'- uCGUGCACG---CCGaUGCC-----------G-GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 87910 0.66 0.732472
Target:  5'- gAGCaACGacuccUGGCU--GGCCGCCGCgCCg -3'
miRNA:   3'- -UCG-UGCac---GCCGAugCCGGCGGCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 13192 0.66 0.732472
Target:  5'- --gGCGUGCcGCUcgGGCCGCCGUg- -3'
miRNA:   3'- ucgUGCACGcCGAugCCGGCGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.