Results 1 - 20 of 535 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14136 | 3' | -63.3 | NC_003521.1 | + | 91261 | 0.66 | 0.733378 |
Target: 5'- gGGCACGgGCGGgaAaccggggaagaagaaGGagcgcgCGCCGCCCg -3' miRNA: 3'- -UCGUGCaCGCCgaUg--------------CCg-----GCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 80865 | 0.66 | 0.732472 |
Target: 5'- aGGCugGguaGCuGGCacuccucggUGCGGUgGuuGCCCa -3' miRNA: 3'- -UCGugCa--CG-CCG---------AUGCCGgCggCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 66581 | 0.66 | 0.732472 |
Target: 5'- cGCaACGUGCGucugaGCUccgACGcGCCcCUGCCCg -3' miRNA: 3'- uCG-UGCACGC-----CGA---UGC-CGGcGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 70139 | 0.66 | 0.732472 |
Target: 5'- gGGCcuCGagcUGCGGCgagcGCGGCUGCCuaUCa -3' miRNA: 3'- -UCGu-GC---ACGCCGa---UGCCGGCGGcgGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 216121 | 0.66 | 0.732472 |
Target: 5'- gAGCGCGgcGCGGa---GGCCGCgGCa- -3' miRNA: 3'- -UCGUGCa-CGCCgaugCCGGCGgCGgg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 78188 | 0.66 | 0.732472 |
Target: 5'- uGGCgaaacgGCGUGCGGa-GCGGgCGCggCGCUCg -3' miRNA: 3'- -UCG------UGCACGCCgaUGCCgGCG--GCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 193305 | 0.66 | 0.732472 |
Target: 5'- gGGaCACGcUGCucaGCUACGGCUGCaucgcgGUCCg -3' miRNA: 3'- -UC-GUGC-ACGc--CGAUGCCGGCGg-----CGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 77454 | 0.66 | 0.732472 |
Target: 5'- cGUugGUGCccGUgacACuGCCGCCGCCg -3' miRNA: 3'- uCGugCACGc-CGa--UGcCGGCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 225175 | 0.66 | 0.732472 |
Target: 5'- cGGCGCuGUGCuGCcgcucgaagAUGGCCuugaaGUCGCCCa -3' miRNA: 3'- -UCGUG-CACGcCGa--------UGCCGG-----CGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 24189 | 0.66 | 0.732472 |
Target: 5'- aAGC-CGgGCGGCauggGCGGaaCGUCGUCCa -3' miRNA: 3'- -UCGuGCaCGCCGa---UGCCg-GCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 53502 | 0.66 | 0.732472 |
Target: 5'- aGGC-CGcugcUGCGGCgucgcaGCGGCCgaugguGCUGUCCg -3' miRNA: 3'- -UCGuGC----ACGCCGa-----UGCCGG------CGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 31245 | 0.66 | 0.732472 |
Target: 5'- cGCuACGUGCGcCccCGGacCCGCCGCCa -3' miRNA: 3'- uCG-UGCACGCcGauGCC--GGCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 149619 | 0.66 | 0.732472 |
Target: 5'- uGCGCGaaaCGGCgcUGGaCGCCGCCg -3' miRNA: 3'- uCGUGCac-GCCGauGCCgGCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 13192 | 0.66 | 0.732472 |
Target: 5'- --gGCGUGCcGCUcgGGCCGCCGUg- -3' miRNA: 3'- ucgUGCACGcCGAugCCGGCGGCGgg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 87910 | 0.66 | 0.732472 |
Target: 5'- gAGCaACGacuccUGGCU--GGCCGCCGCgCCg -3' miRNA: 3'- -UCG-UGCac---GCCGAugCCGGCGGCG-GG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 104574 | 0.66 | 0.732472 |
Target: 5'- -uCACGU-CGGCguaGCGGCCGgCGUgCg -3' miRNA: 3'- ucGUGCAcGCCGa--UGCCGGCgGCGgG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 165878 | 0.66 | 0.732472 |
Target: 5'- uGCACGUGCucgGGCgGCGGguacaccacccCgCGCUGCCg -3' miRNA: 3'- uCGUGCACG---CCGaUGCC-----------G-GCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 39882 | 0.66 | 0.732472 |
Target: 5'- uGCACGuUGgGGUggGCGuGCgGUCGUCCc -3' miRNA: 3'- uCGUGC-ACgCCGa-UGC-CGgCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 129897 | 0.66 | 0.732472 |
Target: 5'- gAGgACGacGaCGGg-GCGGCCGCgCGCCUg -3' miRNA: 3'- -UCgUGCa-C-GCCgaUGCCGGCG-GCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 118087 | 0.66 | 0.732472 |
Target: 5'- cAGCcacuCG-GCGGC----GCCGUCGCCCa -3' miRNA: 3'- -UCGu---GCaCGCCGaugcCGGCGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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