miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 3' -54.5 NC_003521.1 + 209701 0.66 0.984957
Target:  5'- gCUCCAcgaacaGGCGCUccagguccgaGGAGGUcgugcgCAGCGGCa -3'
miRNA:   3'- gGAGGUa-----CUGCGA----------CUUUCG------GUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 124374 0.66 0.984957
Target:  5'- aCCacggCCGcgucgucgugguUGACGUUGAGAGgCAuCGGCg -3'
miRNA:   3'- -GGa---GGU------------ACUGCGACUUUCgGUcGCCG- -5'
14140 3' -54.5 NC_003521.1 + 143311 0.66 0.984957
Target:  5'- cUCUCCGUGGucgccCGCgguaGAGacAGCCgccaccgauGGCGGCu -3'
miRNA:   3'- -GGAGGUACU-----GCGa---CUU--UCGG---------UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 178838 0.66 0.984957
Target:  5'- gCUCaggcGGCGCgggggcgacggGAAAGUCAGCGGg -3'
miRNA:   3'- gGAGgua-CUGCGa----------CUUUCGGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 155379 0.66 0.984957
Target:  5'- uUCUCgccGGCGCgGAcgacgAGGCCGGCGGg -3'
miRNA:   3'- -GGAGguaCUGCGaCU-----UUCGGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 88664 0.66 0.984957
Target:  5'- gCCgCCAgGuCGgUG--GGCCGGCGGCc -3'
miRNA:   3'- -GGaGGUaCuGCgACuuUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 8400 0.66 0.984957
Target:  5'- aCCUCCGacacgcaGGCGCUGGcguuGCCGugccGCaGGCg -3'
miRNA:   3'- -GGAGGUa------CUGCGACUuu--CGGU----CG-CCG- -5'
14140 3' -54.5 NC_003521.1 + 26738 0.66 0.984957
Target:  5'- -gUCC-UGACGCccgUGAuguGGUCGGCGcGCu -3'
miRNA:   3'- ggAGGuACUGCG---ACUu--UCGGUCGC-CG- -5'
14140 3' -54.5 NC_003521.1 + 14426 0.66 0.984957
Target:  5'- gCCUaUCGUGACGUggUGcacacGGCCcugcGGCGGCg -3'
miRNA:   3'- -GGA-GGUACUGCG--ACuu---UCGG----UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 186905 0.66 0.984957
Target:  5'- gCUaCC-UGACGUccaaggGggGcGCCGGUGGCg -3'
miRNA:   3'- gGA-GGuACUGCGa-----CuuU-CGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 192802 0.66 0.984957
Target:  5'- cCCUUgUcgGAuCGCUGGcagcagccgcagAAGcCCGGCGGCg -3'
miRNA:   3'- -GGAG-GuaCU-GCGACU------------UUC-GGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 118178 0.66 0.984957
Target:  5'- gCUCCAgGAC-CUGcu-GCCcauGCGGCu -3'
miRNA:   3'- gGAGGUaCUGcGACuuuCGGu--CGCCG- -5'
14140 3' -54.5 NC_003521.1 + 218490 0.66 0.984957
Target:  5'- --cCCcgGACGUcggGAAaggcgaaccaGGCCAGCaGGCa -3'
miRNA:   3'- ggaGGuaCUGCGa--CUU----------UCGGUCG-CCG- -5'
14140 3' -54.5 NC_003521.1 + 111562 0.66 0.984957
Target:  5'- aCCUCgAgguGCgGCUGA--GCCGGCGGg -3'
miRNA:   3'- -GGAGgUac-UG-CGACUuuCGGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 66338 0.66 0.984957
Target:  5'- gCCgCC-UGGCagcaaCUGGAucccgcucgcguGGCCGGCGGCg -3'
miRNA:   3'- -GGaGGuACUGc----GACUU------------UCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 195161 0.66 0.984784
Target:  5'- gCC-CCugauagcggGUGuGCGCcgGAccccgcgGAGCCGGCGGCg -3'
miRNA:   3'- -GGaGG---------UAC-UGCGa-CU-------UUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 110635 0.66 0.983899
Target:  5'- uCgUCCAUGugcAgGCUGAgaucgcgcggcaggcAGGCCAG-GGCg -3'
miRNA:   3'- -GgAGGUAC---UgCGACU---------------UUCGGUCgCCG- -5'
14140 3' -54.5 NC_003521.1 + 137299 0.66 0.983717
Target:  5'- gCCUCCAUGAgcgaguucgcgcgccUGCUGcuGggcucgcccuuucGCCAGCGcGUg -3'
miRNA:   3'- -GGAGGUACU---------------GCGACuuU-------------CGGUCGC-CG- -5'
14140 3' -54.5 NC_003521.1 + 124434 0.66 0.983163
Target:  5'- uCgUCCGgcgaGACGUgguuGGGCCgcGGCGGCa -3'
miRNA:   3'- -GgAGGUa---CUGCGacu-UUCGG--UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 217192 0.66 0.983163
Target:  5'- -gUCCAUGcCGCccagGcAGGCCacGGCGGUg -3'
miRNA:   3'- ggAGGUACuGCGa---CuUUCGG--UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.