miRNA display CGI


Results 1 - 20 of 679 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 5' -65 NC_003521.1 + 129064 0.66 0.672774
Target:  5'- gCGCCcuugaGCUGGCGCAGacccuCGGCguacugcaggcugugGGUGGCGu -3'
miRNA:   3'- gGCGG-----CGGCCGCGUC-----GCCG---------------UCGCUGC- -5'
14140 5' -65 NC_003521.1 + 54335 0.66 0.669081
Target:  5'- aCCaGgCGCaCGGUGCA-CGGCAGUuugguGACGg -3'
miRNA:   3'- -GG-CgGCG-GCCGCGUcGCCGUCG-----CUGC- -5'
14140 5' -65 NC_003521.1 + 102758 0.66 0.669081
Target:  5'- gCGCCucaGCUGucCGCGGCGGUcgcgGGCGACc -3'
miRNA:   3'- gGCGG---CGGCc-GCGUCGCCG----UCGCUGc -5'
14140 5' -65 NC_003521.1 + 206297 0.66 0.669081
Target:  5'- gUCGCCGCUcGCGCGucuCGGCccGCGGCc -3'
miRNA:   3'- -GGCGGCGGcCGCGUc--GCCGu-CGCUGc -5'
14140 5' -65 NC_003521.1 + 103441 0.66 0.669081
Target:  5'- gCuCCGCCaGGuCGCGGCGGUuGCG-CGc -3'
miRNA:   3'- gGcGGCGG-CC-GCGUCGCCGuCGCuGC- -5'
14140 5' -65 NC_003521.1 + 106589 0.66 0.669081
Target:  5'- -gGCCGagggCGGCGCGGgcagcuacuCGGCcaAGCGGCa -3'
miRNA:   3'- ggCGGCg---GCCGCGUC---------GCCG--UCGCUGc -5'
14140 5' -65 NC_003521.1 + 157988 0.66 0.669081
Target:  5'- gCCGCCGCCcgcGGCGauuuguguauaUAGCGuGCGGUG-UGa -3'
miRNA:   3'- -GGCGGCGG---CCGC-----------GUCGC-CGUCGCuGC- -5'
14140 5' -65 NC_003521.1 + 166463 0.66 0.669081
Target:  5'- gUCGCCGCacuGGcCGUAGcCGcGCAGCaGCGc -3'
miRNA:   3'- -GGCGGCGg--CC-GCGUC-GC-CGUCGcUGC- -5'
14140 5' -65 NC_003521.1 + 60282 0.66 0.669081
Target:  5'- cCCGguaCGCC-GCGgAGaCGGUGGUGACGa -3'
miRNA:   3'- -GGCg--GCGGcCGCgUC-GCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 52234 0.66 0.669081
Target:  5'- -gGCgGCgGGCuaCAGUugGGCAGCGGCa -3'
miRNA:   3'- ggCGgCGgCCGc-GUCG--CCGUCGCUGc -5'
14140 5' -65 NC_003521.1 + 23095 0.66 0.669081
Target:  5'- uCCGUgGCCGG-GCgGGgGGCcGgGACGg -3'
miRNA:   3'- -GGCGgCGGCCgCG-UCgCCGuCgCUGC- -5'
14140 5' -65 NC_003521.1 + 89009 0.66 0.669081
Target:  5'- aUGCCGCgggccccacCGGCGCcaCGGCGGUGAg- -3'
miRNA:   3'- gGCGGCG---------GCCGCGucGCCGUCGCUgc -5'
14140 5' -65 NC_003521.1 + 220989 0.66 0.669081
Target:  5'- aCGUCGCgGGCGaacguguaGGUGGCcAGCGuCa -3'
miRNA:   3'- gGCGGCGgCCGCg-------UCGCCG-UCGCuGc -5'
14140 5' -65 NC_003521.1 + 94045 0.66 0.66631
Target:  5'- cCCGCCuucuguccagGCCGGUuccaaaGCGGCGuGUcugagucacccggaGGCGACGc -3'
miRNA:   3'- -GGCGG----------CGGCCG------CGUCGC-CG--------------UCGCUGC- -5'
14140 5' -65 NC_003521.1 + 141930 0.66 0.663536
Target:  5'- -aGCCGCCugaccGUGCAGCGcgugggcgcccaccuGCugGGCGACGa -3'
miRNA:   3'- ggCGGCGGc----CGCGUCGC---------------CG--UCGCUGC- -5'
14140 5' -65 NC_003521.1 + 99206 0.66 0.663536
Target:  5'- aCgGCCG-CGGCGCAGUccuggaugacgauagGGCuguAGCuGACGg -3'
miRNA:   3'- -GgCGGCgGCCGCGUCG---------------CCG---UCG-CUGC- -5'
14140 5' -65 NC_003521.1 + 43425 0.66 0.659835
Target:  5'- aCUGCgUGCCcGaCGaggaGGCGGCGGCGGCc -3'
miRNA:   3'- -GGCG-GCGGcC-GCg---UCGCCGUCGCUGc -5'
14140 5' -65 NC_003521.1 + 57572 0.66 0.659835
Target:  5'- cUCGCgCGCCuucgagGGCGC--CGGCGGCGAa- -3'
miRNA:   3'- -GGCG-GCGG------CCGCGucGCCGUCGCUgc -5'
14140 5' -65 NC_003521.1 + 144183 0.66 0.659835
Target:  5'- gCCGCCuGCCGcGCGCuggagaacggcaAGCuGCAGCagugcgccGACGc -3'
miRNA:   3'- -GGCGG-CGGC-CGCG------------UCGcCGUCG--------CUGC- -5'
14140 5' -65 NC_003521.1 + 24247 0.66 0.659835
Target:  5'- -gGCgGUCGG-GCGGUauaucGGCGGCGACc -3'
miRNA:   3'- ggCGgCGGCCgCGUCG-----CCGUCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.