miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 84676 0.66 0.823969
Target:  5'- -cGCAgCAGCGCCAGcaGCugcgugcacaccuccAGGCcGGCCu -3'
miRNA:   3'- guCGUaGUCGCGGUC--UG---------------UCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 178952 0.66 0.820694
Target:  5'- gAGCGUCAGCuGCgaccacgaAGACGcGGCGGUgGa -3'
miRNA:   3'- gUCGUAGUCG-CGg-------UCUGU-CCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 166999 0.66 0.820694
Target:  5'- uCGGcCGUCAGCGCguc-CAGGCGGUUg -3'
miRNA:   3'- -GUC-GUAGUCGCGgucuGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 108132 0.66 0.820694
Target:  5'- -cGCGUCc-CGCCAGcCGGGCGcgaGCCGa -3'
miRNA:   3'- guCGUAGucGCGGUCuGUCCGC---CGGU- -5'
14147 5' -60.2 NC_003521.1 + 35085 0.66 0.812399
Target:  5'- gGGCGcUCGacaUGCCGGAUucgAGGCGGCCc -3'
miRNA:   3'- gUCGU-AGUc--GCGGUCUG---UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 180669 0.66 0.812399
Target:  5'- aGGCGUUGGCGCgAGGCcuGCGuGCUc -3'
miRNA:   3'- gUCGUAGUCGCGgUCUGucCGC-CGGu -5'
14147 5' -60.2 NC_003521.1 + 98263 0.66 0.812399
Target:  5'- gGGCA-CGGCgaGCCuGGCGGGCGacaaGCCGu -3'
miRNA:   3'- gUCGUaGUCG--CGGuCUGUCCGC----CGGU- -5'
14147 5' -60.2 NC_003521.1 + 134947 0.66 0.812399
Target:  5'- cCGGCAUCuGCGCCcuGAUcguGGGCacgcGCCAc -3'
miRNA:   3'- -GUCGUAGuCGCGGu-CUG---UCCGc---CGGU- -5'
14147 5' -60.2 NC_003521.1 + 128480 0.66 0.812399
Target:  5'- gGGCAgCGGCGUgAGGCuGuGCGcGCCGg -3'
miRNA:   3'- gUCGUaGUCGCGgUCUGuC-CGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 101927 0.66 0.812399
Target:  5'- cCGGCGUacuCGCCGGugGGGUccacguGGCCGc -3'
miRNA:   3'- -GUCGUAgucGCGGUCugUCCG------CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 106705 0.66 0.812399
Target:  5'- uCAGgGUCAGCuaGgCGcGCAGGaCGGCCAc -3'
miRNA:   3'- -GUCgUAGUCG--CgGUcUGUCC-GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 17172 0.66 0.811561
Target:  5'- aGGCG-CAGCGCUggcagcuGGGCAGGCGcaucguggacGCCu -3'
miRNA:   3'- gUCGUaGUCGCGG-------UCUGUCCGC----------CGGu -5'
14147 5' -60.2 NC_003521.1 + 168548 0.66 0.80988
Target:  5'- gCGGCggCGGCGCUGGcgggcugcggguaaGguGGCGGCUg -3'
miRNA:   3'- -GUCGuaGUCGCGGUC--------------UguCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 27013 0.66 0.807349
Target:  5'- aCGGCAUCgaaaccgaggcuccaGGCGCgGcGCAGG-GGCCGa -3'
miRNA:   3'- -GUCGUAG---------------UCGCGgUcUGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 128908 0.66 0.803953
Target:  5'- gCGGCGUCGGUaCaCAGgucgaaGCGGGCGGCgCGg -3'
miRNA:   3'- -GUCGUAGUCGcG-GUC------UGUCCGCCG-GU- -5'
14147 5' -60.2 NC_003521.1 + 191016 0.66 0.803953
Target:  5'- -uGCA-CGGCGcCCAGccauuCGGGCGGCa- -3'
miRNA:   3'- guCGUaGUCGC-GGUCu----GUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 40900 0.66 0.803953
Target:  5'- gGGgGUCAGUuuaauaGCgAGGCggGGGCGGCCc -3'
miRNA:   3'- gUCgUAGUCG------CGgUCUG--UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 206160 0.66 0.803953
Target:  5'- aGGCcUCcgagaAGC-CCAGGagcaGGGCGGCCAg -3'
miRNA:   3'- gUCGuAG-----UCGcGGUCUg---UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 99411 0.66 0.803953
Target:  5'- gCAGCGUCuGCucGUCgaagGGACAGuaGGCCAg -3'
miRNA:   3'- -GUCGUAGuCG--CGG----UCUGUCcgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 29728 0.66 0.803953
Target:  5'- gAGCcUCGGCGCgaCGGACAGGCaGGa-- -3'
miRNA:   3'- gUCGuAGUCGCG--GUCUGUCCG-CCggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.