miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 209059 0.66 0.990654
Target:  5'- gCGACUggcGCGACCCCGaugugccggUCGAGgcggcggaggcggugGCCgcgGCg -3'
miRNA:   3'- -GUUGG---UGCUGGGGU---------AGCUCa--------------UGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 85493 0.66 0.990535
Target:  5'- --cCCGCGcCCCCGcCGGG-ACCcGCg -3'
miRNA:   3'- guuGGUGCuGGGGUaGCUCaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 183903 0.66 0.990535
Target:  5'- gAGCCACGGCCgUCAcggCGcuGUACCggUGCa -3'
miRNA:   3'- gUUGGUGCUGG-GGUa--GCu-CAUGG--ACG- -5'
14148 3' -53.8 NC_003521.1 + 152773 0.66 0.990535
Target:  5'- -cACCGCGACCUCAUccgcgcgcucaaCGAGcucaAgCUGCa -3'
miRNA:   3'- guUGGUGCUGGGGUA------------GCUCa---UgGACG- -5'
14148 3' -53.8 NC_003521.1 + 182003 0.66 0.990535
Target:  5'- --gUCACGGCCgCCA-CGcGcUGCCUGCu -3'
miRNA:   3'- guuGGUGCUGG-GGUaGCuC-AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 179228 0.66 0.990535
Target:  5'- -cGCUGCGcCCCCugcagCGAGU-UCUGCa -3'
miRNA:   3'- guUGGUGCuGGGGua---GCUCAuGGACG- -5'
14148 3' -53.8 NC_003521.1 + 142084 0.66 0.990535
Target:  5'- aCGACUACGAcgaccaCCCCcgCGgcaGGUACCcuccgcUGCg -3'
miRNA:   3'- -GUUGGUGCU------GGGGuaGC---UCAUGG------ACG- -5'
14148 3' -53.8 NC_003521.1 + 167846 0.66 0.990535
Target:  5'- -cGCCGCGGgCUCGUCGGcUACUUGa -3'
miRNA:   3'- guUGGUGCUgGGGUAGCUcAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 88887 0.66 0.990535
Target:  5'- -uGCCuguuCGACCUgcUCucGUACCUGCg -3'
miRNA:   3'- guUGGu---GCUGGGguAGcuCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 122113 0.66 0.990535
Target:  5'- -uGCCGCG-CCCC-UCGcccauGaGCCUGCc -3'
miRNA:   3'- guUGGUGCuGGGGuAGCu----CaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 73192 0.66 0.990414
Target:  5'- uGGCCGgcaucgacgugacCGACCCC---GAGcGCCUGCg -3'
miRNA:   3'- gUUGGU-------------GCUGGGGuagCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 9433 0.66 0.989792
Target:  5'- aGACCACcACCgUCAUCacuagcaccucuacAGUACCUGCg -3'
miRNA:   3'- gUUGGUGcUGG-GGUAGc-------------UCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 6003 0.66 0.989272
Target:  5'- uCGGCCACGaACCCCGacgaCGAG-GCCgaggaGCc -3'
miRNA:   3'- -GUUGGUGC-UGGGGUa---GCUCaUGGa----CG- -5'
14148 3' -53.8 NC_003521.1 + 209269 0.66 0.989272
Target:  5'- gCGACCugGGCUUCGcCGAGUGgUcGCa -3'
miRNA:   3'- -GUUGGugCUGGGGUaGCUCAUgGaCG- -5'
14148 3' -53.8 NC_003521.1 + 167448 0.66 0.989272
Target:  5'- gGACCACcACCCCGUggucagaucCGAGagggaagGCCUGa -3'
miRNA:   3'- gUUGGUGcUGGGGUA---------GCUCa------UGGACg -5'
14148 3' -53.8 NC_003521.1 + 232200 0.66 0.989272
Target:  5'- -cGCCAUgGGCCCCcgCGGGUGgUggugGCu -3'
miRNA:   3'- guUGGUG-CUGGGGuaGCUCAUgGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 113045 0.66 0.989272
Target:  5'- gCGGCUACGGCCgCCGcccgacuaCGAGgagACgCUGCg -3'
miRNA:   3'- -GUUGGUGCUGG-GGUa-------GCUCa--UG-GACG- -5'
14148 3' -53.8 NC_003521.1 + 116183 0.66 0.989272
Target:  5'- -uGCC-CGACCCgGugaUCGAcaacUACCUGCu -3'
miRNA:   3'- guUGGuGCUGGGgU---AGCUc---AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 109721 0.66 0.989272
Target:  5'- gCAGCCGCGccGCCCCgccGUCcGGaGCCcGCg -3'
miRNA:   3'- -GUUGGUGC--UGGGG---UAGcUCaUGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 193916 0.66 0.989272
Target:  5'- uCAuCgACGACCCCuucgaCGAGUGCCc-- -3'
miRNA:   3'- -GUuGgUGCUGGGGua---GCUCAUGGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.