miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 5' -60.8 NC_003521.1 + 148520 0.65 0.845223
Target:  5'- cGCGGcugcgccuccucccGCGCCUUCCcCGAggaCGCGGUuuGAa -3'
miRNA:   3'- -CGCC--------------CGCGGAAGGaGUUg--GCGCCG--CU- -5'
14164 5' -60.8 NC_003521.1 + 100232 0.65 0.845223
Target:  5'- aGCGGaGCGUCUcgccggccgcgaaaUCCUCGG--GCGGCGc -3'
miRNA:   3'- -CGCC-CGCGGA--------------AGGAGUUggCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 118159 0.66 0.839924
Target:  5'- uGCuGGGCGCCUcgaucgcgcUCCagGACCugcugcccauGCGGCu- -3'
miRNA:   3'- -CG-CCCGCGGA---------AGGagUUGG----------CGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 206613 0.66 0.839924
Target:  5'- aCGGGCGCCgUCUac-GCCGCccuGGUGGg -3'
miRNA:   3'- cGCCCGCGGaAGGaguUGGCG---CCGCU- -5'
14164 5' -60.8 NC_003521.1 + 169371 0.66 0.839924
Target:  5'- aGCGGGCGCaugUCUUCccCCGCGa--- -3'
miRNA:   3'- -CGCCCGCGga-AGGAGuuGGCGCcgcu -5'
14164 5' -60.8 NC_003521.1 + 111902 0.66 0.839924
Target:  5'- cGCuGGcGCGCCaggcCCUCAACCGCauccaGCGc -3'
miRNA:   3'- -CG-CC-CGCGGaa--GGAGUUGGCGc----CGCu -5'
14164 5' -60.8 NC_003521.1 + 36442 0.66 0.839924
Target:  5'- cGCGGagacgaguuGCGCUcgcUCCUgGGCCGCGaCGAa -3'
miRNA:   3'- -CGCC---------CGCGGa--AGGAgUUGGCGCcGCU- -5'
14164 5' -60.8 NC_003521.1 + 87155 0.66 0.839924
Target:  5'- aGCGGGCGCagUUCgu-GCgCGCGGCc- -3'
miRNA:   3'- -CGCCCGCGgaAGGaguUG-GCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 117467 0.66 0.839924
Target:  5'- uGCGGcUGUCggaggCCaCGGCCGCGGCGc -3'
miRNA:   3'- -CGCCcGCGGaa---GGaGUUGGCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 168401 0.66 0.839924
Target:  5'- gGCGaGGacuCGCCcucUUCCUCAgugccuccGCCGCuGGUGAu -3'
miRNA:   3'- -CGC-CC---GCGG---AAGGAGU--------UGGCG-CCGCU- -5'
14164 5' -60.8 NC_003521.1 + 124208 0.66 0.839924
Target:  5'- aGCGGGC-CCUUUCUggcccgCGACCG-GGCc- -3'
miRNA:   3'- -CGCCCGcGGAAGGA------GUUGGCgCCGcu -5'
14164 5' -60.8 NC_003521.1 + 148865 0.66 0.83916
Target:  5'- cGCGccaGCuacgccaGCCUggCCUCGGCCGUGGCcGAc -3'
miRNA:   3'- -CGCc--CG-------CGGAa-GGAGUUGGCGCCG-CU- -5'
14164 5' -60.8 NC_003521.1 + 72169 0.66 0.832214
Target:  5'- --cGGCGCCgucggcaugcCCUCGaugACCGUGGCGc -3'
miRNA:   3'- cgcCCGCGGaa--------GGAGU---UGGCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 221344 0.66 0.832214
Target:  5'- aGCGGGCcaCCUgcaCCU-GGCCGCGcaGCGAc -3'
miRNA:   3'- -CGCCCGc-GGAa--GGAgUUGGCGC--CGCU- -5'
14164 5' -60.8 NC_003521.1 + 119601 0.66 0.832214
Target:  5'- gGCGGGUGCagcgUCUCGuGCUGCaGGUGGa -3'
miRNA:   3'- -CGCCCGCGgaa-GGAGU-UGGCG-CCGCU- -5'
14164 5' -60.8 NC_003521.1 + 55750 0.66 0.832214
Target:  5'- cGCGGGCGgCagCgaCAGgCGCGGCc- -3'
miRNA:   3'- -CGCCCGCgGaaGgaGUUgGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 131054 0.66 0.827511
Target:  5'- gGCGGcGgGCC-UCUggacgcgguggcggCGACCGCGGCu- -3'
miRNA:   3'- -CGCC-CgCGGaAGGa-------------GUUGGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 206570 0.66 0.825138
Target:  5'- -aGGGCaagaCCUUCUUCAccacgucaagauccuCUGCGGCGAc -3'
miRNA:   3'- cgCCCGc---GGAAGGAGUu--------------GGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 123616 0.66 0.824344
Target:  5'- aGCGGGUGCgacaUCUCcACCGCcucgGGCGGc -3'
miRNA:   3'- -CGCCCGCGgaa-GGAGuUGGCG----CCGCU- -5'
14164 5' -60.8 NC_003521.1 + 223345 0.66 0.824344
Target:  5'- --aGGUGCCccaggCCUCGGCgGCGGCc- -3'
miRNA:   3'- cgcCCGCGGaa---GGAGUUGgCGCCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.