miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14165 3' -53.9 NC_003521.1 + 112681 0.66 0.982836
Target:  5'- --cUGCAGGCCuucgcCGAGCGCgGg---- -3'
miRNA:   3'- gaaGCGUCCGGu----GCUCGCGgUauaaa -5'
14165 3' -53.9 NC_003521.1 + 88603 0.66 0.982836
Target:  5'- -aUUGCccacaGCCACGuGCGCCGUGa-- -3'
miRNA:   3'- gaAGCGuc---CGGUGCuCGCGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 88174 0.66 0.982836
Target:  5'- -cUCGCAGGUgACG-GCGUCGc---- -3'
miRNA:   3'- gaAGCGUCCGgUGCuCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 40281 0.66 0.982836
Target:  5'- gUUUGCAcGCCugGGGaCGCCAg---- -3'
miRNA:   3'- gAAGCGUcCGGugCUC-GCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 175803 0.66 0.982836
Target:  5'- --aCGCGGGCCAgGAuGCGCg------ -3'
miRNA:   3'- gaaGCGUCCGGUgCU-CGCGguauaaa -5'
14165 3' -53.9 NC_003521.1 + 226857 0.66 0.982836
Target:  5'- -gUCGUA-GUCACGGGCGCgGUAc-- -3'
miRNA:   3'- gaAGCGUcCGGUGCUCGCGgUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 236464 0.66 0.982836
Target:  5'- --aCGCGGGCCGCGAugagcgaacCGCCGg---- -3'
miRNA:   3'- gaaGCGUCCGGUGCUc--------GCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 56735 0.66 0.982836
Target:  5'- -aUCaGC-GGUC-CGAGCGCCAUGg-- -3'
miRNA:   3'- gaAG-CGuCCGGuGCUCGCGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 131132 0.66 0.982245
Target:  5'- cCUUCGCccGCCAgGAGCucuaccugcuggguGCCAUGa-- -3'
miRNA:   3'- -GAAGCGucCGGUgCUCG--------------CGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 224599 0.66 0.980807
Target:  5'- uUUCGCAcucGGCCAggcggcaGGGCGCCGc---- -3'
miRNA:   3'- gAAGCGU---CCGGUg------CUCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 180857 0.66 0.980807
Target:  5'- --cCGCGGGUCagGCGGGCGUUGUGg-- -3'
miRNA:   3'- gaaGCGUCCGG--UGCUCGCGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 73087 0.66 0.980807
Target:  5'- --cCGCcGGCCAcCGcAGCGCCAc---- -3'
miRNA:   3'- gaaGCGuCCGGU-GC-UCGCGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 91198 0.66 0.980807
Target:  5'- -cUCGCcGGCgGCGuccAGCGCCGUu--- -3'
miRNA:   3'- gaAGCGuCCGgUGC---UCGCGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 190948 0.66 0.980807
Target:  5'- --aCGCAcGCCACGAcCGCCAUc--- -3'
miRNA:   3'- gaaGCGUcCGGUGCUcGCGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 211467 0.66 0.978603
Target:  5'- ---gGCAGGCCAUGAGgCGCa------ -3'
miRNA:   3'- gaagCGUCCGGUGCUC-GCGguauaaa -5'
14165 3' -53.9 NC_003521.1 + 115392 0.66 0.978603
Target:  5'- --gUGCAGGgCGCGGGCgGCCGc---- -3'
miRNA:   3'- gaaGCGUCCgGUGCUCG-CGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 31794 0.66 0.978603
Target:  5'- -cUCGCagaAGGCCGaguagaggcguuUGAGCGCCGUc--- -3'
miRNA:   3'- gaAGCG---UCCGGU------------GCUCGCGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 173597 0.66 0.978603
Target:  5'- -gUCcCAGGCCAUGAGCaCCAc---- -3'
miRNA:   3'- gaAGcGUCCGGUGCUCGcGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 117474 0.66 0.976217
Target:  5'- -gUCGgAGGCCACGgccgcGGCGCUg----- -3'
miRNA:   3'- gaAGCgUCCGGUGC-----UCGCGGuauaaa -5'
14165 3' -53.9 NC_003521.1 + 215439 0.66 0.976217
Target:  5'- ---aGCAGaGCCGCGGGUGCUg----- -3'
miRNA:   3'- gaagCGUC-CGGUGCUCGCGGuauaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.