miRNA display CGI


Results 1 - 20 of 170 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14165 5' -61.8 NC_003521.1 + 31811 0.66 0.815327
Target:  5'- aGAGGCGuuuGAGCGccgUCUCGgcCCGGgCGCc -3'
miRNA:   3'- gCUUCGC---CUCGC---AGAGC--GGCCgGCGc -5'
14165 5' -61.8 NC_003521.1 + 207612 0.66 0.815327
Target:  5'- aGAuccGUcuGGGCGgCUCGCCGGCCuGCa -3'
miRNA:   3'- gCUu--CGc-CUCGCaGAGCGGCCGG-CGc -5'
14165 5' -61.8 NC_003521.1 + 195166 0.66 0.815327
Target:  5'- uGAuAGCGG-GUGUg-CGCCGGaccCCGCGg -3'
miRNA:   3'- gCU-UCGCCuCGCAgaGCGGCC---GGCGC- -5'
14165 5' -61.8 NC_003521.1 + 36884 0.66 0.815327
Target:  5'- -uGAGCGaGGGCGUCagGCa-GCCGUGg -3'
miRNA:   3'- gcUUCGC-CUCGCAGagCGgcCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 223929 0.66 0.814523
Target:  5'- gGAGGCGcggccgaGGGgGUCgaGgCGGCCGCGg -3'
miRNA:   3'- gCUUCGC-------CUCgCAGagCgGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 197272 0.66 0.814523
Target:  5'- --cAGCGGccgccucugucgcGGCGUCUCucgGCuCGGCCGUc -3'
miRNA:   3'- gcuUCGCC-------------UCGCAGAG---CG-GCCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 185041 0.66 0.812912
Target:  5'- --cGGCGGcaaguucaucuucgAGCuGUaC-CGCCGGCCGCGc -3'
miRNA:   3'- gcuUCGCC--------------UCG-CA-GaGCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 169572 0.66 0.80723
Target:  5'- cCGAuguuGGCGGgaucguGGCGUCUgUGCUGucaguGCCGCGg -3'
miRNA:   3'- -GCU----UCGCC------UCGCAGA-GCGGC-----CGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 233145 0.66 0.80723
Target:  5'- gGggGCGGGuucGUGcC-CGCCGGCUucaGCGu -3'
miRNA:   3'- gCuuCGCCU---CGCaGaGCGGCCGG---CGC- -5'
14165 5' -61.8 NC_003521.1 + 76359 0.66 0.80723
Target:  5'- gCGGcGGCGGcAGCGgCgacCGUgaCGGCCGCGg -3'
miRNA:   3'- -GCU-UCGCC-UCGCaGa--GCG--GCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 217607 0.66 0.80723
Target:  5'- gGAccAGCaGGGGCGUCU---CGGCCGCc -3'
miRNA:   3'- gCU--UCG-CCUCGCAGAgcgGCCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 105892 0.66 0.80723
Target:  5'- aGAuGCcgGGGGCGUgUaCGuaGGCCGCGu -3'
miRNA:   3'- gCUuCG--CCUCGCAgA-GCggCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 211952 0.66 0.798998
Target:  5'- cCGuGAGCuuGGGCGaCUCGaCCGuGCCGCGc -3'
miRNA:   3'- -GC-UUCGc-CUCGCaGAGC-GGC-CGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 198745 0.66 0.798998
Target:  5'- aCGAGGUcuuGcCGUgCUCGCUGGUCGCGc -3'
miRNA:   3'- -GCUUCGccuC-GCA-GAGCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 45307 0.66 0.798998
Target:  5'- aGGAGcCGGAGCccga-GCUGGCCGaCGg -3'
miRNA:   3'- gCUUC-GCCUCGcagagCGGCCGGC-GC- -5'
14165 5' -61.8 NC_003521.1 + 124457 0.66 0.798998
Target:  5'- cCGcGGCGGcacGCG-UUCGCCG-CCGCGc -3'
miRNA:   3'- -GCuUCGCCu--CGCaGAGCGGCcGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 69980 0.66 0.798998
Target:  5'- aGAAGCcGAcgcGCGUCUCGUCGuGCagucccaGCGa -3'
miRNA:   3'- gCUUCGcCU---CGCAGAGCGGC-CGg------CGC- -5'
14165 5' -61.8 NC_003521.1 + 101121 0.66 0.798998
Target:  5'- gCGAGG-GGGGCGggUCgGCgGGCaCGCGg -3'
miRNA:   3'- -GCUUCgCCUCGCagAG-CGgCCG-GCGC- -5'
14165 5' -61.8 NC_003521.1 + 30912 0.66 0.798998
Target:  5'- gCGGcaGGCGaGAGCgGUCcuggggcagUCGCCGuGCCGUa -3'
miRNA:   3'- -GCU--UCGC-CUCG-CAG---------AGCGGC-CGGCGc -5'
14165 5' -61.8 NC_003521.1 + 195106 0.66 0.798998
Target:  5'- cCGucGCGGGGguccuCGUCaUCGUCG-CCGCGg -3'
miRNA:   3'- -GCuuCGCCUC-----GCAG-AGCGGCcGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.