miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 3' -51.1 NC_003521.1 + 37510 0.66 0.998779
Target:  5'- -cGGGc-CCGCGGAcaucagcgacguccuGGggGugGGcAGCg -3'
miRNA:   3'- caCCCuuGGCGUCU---------------UCuuCugCU-UCG- -5'
14167 3' -51.1 NC_003521.1 + 67011 0.66 0.998779
Target:  5'- -gGGGAggugcaccacgccgaGCUGguGGAGGucaaGGACGAGGa -3'
miRNA:   3'- caCCCU---------------UGGCguCUUCU----UCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 119375 0.66 0.998685
Target:  5'- -gGGGAuguCCGCcgGGAAGAAGAucaCGucGUg -3'
miRNA:   3'- caCCCUu--GGCG--UCUUCUUCU---GCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 210738 0.66 0.998685
Target:  5'- --cGGAAUCGUAGGccguGGCGggGCa -3'
miRNA:   3'- cacCCUUGGCGUCUucuuCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 16904 0.66 0.998685
Target:  5'- gGUGGaGGACgaggagGCGGAcgauGAAGACGAGGa -3'
miRNA:   3'- -CACC-CUUGg-----CGUCUu---CUUCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 173387 0.66 0.998685
Target:  5'- cUGGGAGgagcggcuCCGCAaacaccacccguGGAGggGGCGcuGCu -3'
miRNA:   3'- cACCCUU--------GGCGU------------CUUCuuCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 24157 0.66 0.998685
Target:  5'- -cGGGGuACuCGCGGGgcacucggaaAGGAG-CGAAGCc -3'
miRNA:   3'- caCCCU-UG-GCGUCU----------UCUUCuGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 227572 0.66 0.998685
Target:  5'- ---aGAACgGCAGGuaGGAGGACGGaugaGGCa -3'
miRNA:   3'- caccCUUGgCGUCU--UCUUCUGCU----UCG- -5'
14167 3' -51.1 NC_003521.1 + 191227 0.66 0.998685
Target:  5'- -gGGGuAAUCGagucuuGGGAGGAGGCGgcGCc -3'
miRNA:   3'- caCCC-UUGGCg-----UCUUCUUCUGCuuCG- -5'
14167 3' -51.1 NC_003521.1 + 98452 0.66 0.998685
Target:  5'- cUGGGcuaCGUuGGAGGAGGCGGcGGCg -3'
miRNA:   3'- cACCCuugGCGuCUUCUUCUGCU-UCG- -5'
14167 3' -51.1 NC_003521.1 + 70367 0.66 0.99866
Target:  5'- -cGGGGuagaGCCGCAGgcGGcgguagagguagcGGGCGucguAGCg -3'
miRNA:   3'- caCCCU----UGGCGUCuuCU-------------UCUGCu---UCG- -5'
14167 3' -51.1 NC_003521.1 + 226883 0.66 0.998421
Target:  5'- -aGGGcAGCUGCGGggGcaccacGGCGGccAGCg -3'
miRNA:   3'- caCCC-UUGGCGUCuuCuu----CUGCU--UCG- -5'
14167 3' -51.1 NC_003521.1 + 119806 0.66 0.998421
Target:  5'- --cGGcGCCGCcGAGGAGGucUGGAGCa -3'
miRNA:   3'- cacCCuUGGCGuCUUCUUCu-GCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 7392 0.66 0.998421
Target:  5'- -aGGG-ACCGCGucGAGGccGuCGGAGCc -3'
miRNA:   3'- caCCCuUGGCGU--CUUCuuCuGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 9380 0.66 0.998421
Target:  5'- aGUGcGGAAUgGC-GAuaauGAAGGCGAAGa -3'
miRNA:   3'- -CAC-CCUUGgCGuCUu---CUUCUGCUUCg -5'
14167 3' -51.1 NC_003521.1 + 119779 0.66 0.998421
Target:  5'- cUGGGAccGgCGCAGc-GgcGACGAGGUc -3'
miRNA:   3'- cACCCU--UgGCGUCuuCuuCUGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 181658 0.66 0.998421
Target:  5'- -gGGGcaugGugCGCGGggGAgaucggagagAGACGGcAGCu -3'
miRNA:   3'- caCCC----UugGCGUCuuCU----------UCUGCU-UCG- -5'
14167 3' -51.1 NC_003521.1 + 19428 0.66 0.998421
Target:  5'- cGUGGGuACgGagggugagaaaGGggGGAGGCGcGGCg -3'
miRNA:   3'- -CACCCuUGgCg----------UCuuCUUCUGCuUCG- -5'
14167 3' -51.1 NC_003521.1 + 195324 0.66 0.998421
Target:  5'- -cGGcGGAgCGCAacAGAGGuCGGAGCu -3'
miRNA:   3'- caCC-CUUgGCGUcuUCUUCuGCUUCG- -5'
14167 3' -51.1 NC_003521.1 + 218691 0.66 0.998421
Target:  5'- -aGGGcGGCgGCGaaggcGGAGGAGACGGcGGCg -3'
miRNA:   3'- caCCC-UUGgCGU-----CUUCUUCUGCU-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.