Results 1 - 20 of 261 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14167 | 3' | -51.1 | NC_003521.1 | + | 37510 | 0.66 | 0.998779 |
Target: 5'- -cGGGc-CCGCGGAcaucagcgacguccuGGggGugGGcAGCg -3' miRNA: 3'- caCCCuuGGCGUCU---------------UCuuCugCU-UCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 67011 | 0.66 | 0.998779 |
Target: 5'- -gGGGAggugcaccacgccgaGCUGguGGAGGucaaGGACGAGGa -3' miRNA: 3'- caCCCU---------------UGGCguCUUCU----UCUGCUUCg -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 16904 | 0.66 | 0.998685 |
Target: 5'- gGUGGaGGACgaggagGCGGAcgauGAAGACGAGGa -3' miRNA: 3'- -CACC-CUUGg-----CGUCUu---CUUCUGCUUCg -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 191227 | 0.66 | 0.998685 |
Target: 5'- -gGGGuAAUCGagucuuGGGAGGAGGCGgcGCc -3' miRNA: 3'- caCCC-UUGGCg-----UCUUCUUCUGCuuCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 210738 | 0.66 | 0.998685 |
Target: 5'- --cGGAAUCGUAGGccguGGCGggGCa -3' miRNA: 3'- cacCCUUGGCGUCUucuuCUGCuuCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 98452 | 0.66 | 0.998685 |
Target: 5'- cUGGGcuaCGUuGGAGGAGGCGGcGGCg -3' miRNA: 3'- cACCCuugGCGuCUUCUUCUGCU-UCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 173387 | 0.66 | 0.998685 |
Target: 5'- cUGGGAGgagcggcuCCGCAaacaccacccguGGAGggGGCGcuGCu -3' miRNA: 3'- cACCCUU--------GGCGU------------CUUCuuCUGCuuCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 24157 | 0.66 | 0.998685 |
Target: 5'- -cGGGGuACuCGCGGGgcacucggaaAGGAG-CGAAGCc -3' miRNA: 3'- caCCCU-UG-GCGUCU----------UCUUCuGCUUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 119375 | 0.66 | 0.998685 |
Target: 5'- -gGGGAuguCCGCcgGGAAGAAGAucaCGucGUg -3' miRNA: 3'- caCCCUu--GGCG--UCUUCUUCU---GCuuCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 227572 | 0.66 | 0.998685 |
Target: 5'- ---aGAACgGCAGGuaGGAGGACGGaugaGGCa -3' miRNA: 3'- caccCUUGgCGUCU--UCUUCUGCU----UCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 70367 | 0.66 | 0.99866 |
Target: 5'- -cGGGGuagaGCCGCAGgcGGcgguagagguagcGGGCGucguAGCg -3' miRNA: 3'- caCCCU----UGGCGUCuuCU-------------UCUGCu---UCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 98448 | 0.66 | 0.998421 |
Target: 5'- -cGGuGAGacgaCGCAGAGGAGGAgGuAGUc -3' miRNA: 3'- caCC-CUUg---GCGUCUUCUUCUgCuUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 226883 | 0.66 | 0.998421 |
Target: 5'- -aGGGcAGCUGCGGggGcaccacGGCGGccAGCg -3' miRNA: 3'- caCCC-UUGGCGUCuuCuu----CUGCU--UCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 181658 | 0.66 | 0.998421 |
Target: 5'- -gGGGcaugGugCGCGGggGAgaucggagagAGACGGcAGCu -3' miRNA: 3'- caCCC----UugGCGUCuuCU----------UCUGCU-UCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 218691 | 0.66 | 0.998421 |
Target: 5'- -aGGGcGGCgGCGaaggcGGAGGAGACGGcGGCg -3' miRNA: 3'- caCCC-UUGgCGU-----CUUCUUCUGCU-UCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 195324 | 0.66 | 0.998421 |
Target: 5'- -cGGcGGAgCGCAacAGAGGuCGGAGCu -3' miRNA: 3'- caCC-CUUgGCGUcuUCUUCuGCUUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 9380 | 0.66 | 0.998421 |
Target: 5'- aGUGcGGAAUgGC-GAuaauGAAGGCGAAGa -3' miRNA: 3'- -CAC-CCUUGgCGuCUu---CUUCUGCUUCg -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 119779 | 0.66 | 0.998421 |
Target: 5'- cUGGGAccGgCGCAGc-GgcGACGAGGUc -3' miRNA: 3'- cACCCU--UgGCGUCuuCuuCUGCUUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 19428 | 0.66 | 0.998421 |
Target: 5'- cGUGGGuACgGagggugagaaaGGggGGAGGCGcGGCg -3' miRNA: 3'- -CACCCuUGgCg----------UCuuCUUCUGCuUCG- -5' |
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14167 | 3' | -51.1 | NC_003521.1 | + | 7392 | 0.66 | 0.998421 |
Target: 5'- -aGGG-ACCGCGucGAGGccGuCGGAGCc -3' miRNA: 3'- caCCCuUGGCGU--CUUCuuCuGCUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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