miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 5' -63.6 NC_003521.1 + 18921 0.66 0.705519
Target:  5'- aGGGUGgCGCCgCGCGCCgGCAauCCg--- -3'
miRNA:   3'- -CCCGCgGCGG-GCGUGGaCGU--GGacag -5'
14167 5' -63.6 NC_003521.1 + 117152 0.66 0.705519
Target:  5'- uGGCGCagaugGCCaucguGCGCCUGUcgcugaACCUGUUu -3'
miRNA:   3'- cCCGCGg----CGGg----CGUGGACG------UGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 36839 0.66 0.705519
Target:  5'- cGGCGCUG-CUGUGCCggguagaGCACCUGa- -3'
miRNA:   3'- cCCGCGGCgGGCGUGGa------CGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 69315 0.66 0.705519
Target:  5'- cGGCGCCGUCCuCGCUUuccaaaCAgCUGUCg -3'
miRNA:   3'- cCCGCGGCGGGcGUGGAc-----GUgGACAG- -5'
14167 5' -63.6 NC_003521.1 + 49820 0.66 0.705519
Target:  5'- uGGGCGCCGUgCaguGCGCCgUGCagacgGCC-GUCc -3'
miRNA:   3'- -CCCGCGGCGgG---CGUGG-ACG-----UGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 14955 0.66 0.696211
Target:  5'- -cGCGCauggaGCaCCGCACCUGUGCCc--- -3'
miRNA:   3'- ccCGCGg----CG-GGCGUGGACGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 82849 0.66 0.696211
Target:  5'- cGGGCgGCgGCgUCGCuACCaGCGCCgucGUCg -3'
miRNA:   3'- -CCCG-CGgCG-GGCG-UGGaCGUGGa--CAG- -5'
14167 5' -63.6 NC_003521.1 + 137096 0.66 0.696211
Target:  5'- cGGUGCUG-CgGCACCUGaACCUGg- -3'
miRNA:   3'- cCCGCGGCgGgCGUGGACgUGGACag -5'
14167 5' -63.6 NC_003521.1 + 103326 0.66 0.696211
Target:  5'- aGGCGCUGa-CGCGCCaGCGCCgugcgGUa -3'
miRNA:   3'- cCCGCGGCggGCGUGGaCGUGGa----CAg -5'
14167 5' -63.6 NC_003521.1 + 136146 0.66 0.696211
Target:  5'- uGGcGCGCCGCCaC-CACCUGCuggaGCCcaUCg -3'
miRNA:   3'- -CC-CGCGGCGG-GcGUGGACG----UGGacAG- -5'
14167 5' -63.6 NC_003521.1 + 202655 0.66 0.696211
Target:  5'- cGGCcCCGCUgggaCGC-CCUGCACCUacacccuaaagcGUCa -3'
miRNA:   3'- cCCGcGGCGG----GCGuGGACGUGGA------------CAG- -5'
14167 5' -63.6 NC_003521.1 + 138897 0.66 0.695278
Target:  5'- cGGGCaucuaccaccacgGCCGCUCgguGCGCCUGC-CCUa-- -3'
miRNA:   3'- -CCCG-------------CGGCGGG---CGUGGACGuGGAcag -5'
14167 5' -63.6 NC_003521.1 + 12750 0.66 0.690604
Target:  5'- cGGCGCCucggacgugagcuggGaCCCGCGCgUGCGCCc--- -3'
miRNA:   3'- cCCGCGG---------------C-GGGCGUGgACGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 6390 0.66 0.686858
Target:  5'- gGGGCGCCGCa-GCuACCgcgGCGgCgacggGUCu -3'
miRNA:   3'- -CCCGCGGCGggCG-UGGa--CGUgGa----CAG- -5'
14167 5' -63.6 NC_003521.1 + 165917 0.66 0.686858
Target:  5'- cGGGCcgacuccaccGCCGCCaccgucucgCGCAgCaGCGCCgUGUCg -3'
miRNA:   3'- -CCCG----------CGGCGG---------GCGUgGaCGUGG-ACAG- -5'
14167 5' -63.6 NC_003521.1 + 102831 0.66 0.686858
Target:  5'- cGGCGCUGCgagaagCGCGCCaggGCGCCcGUg -3'
miRNA:   3'- cCCGCGGCGg-----GCGUGGa--CGUGGaCAg -5'
14167 5' -63.6 NC_003521.1 + 211961 0.66 0.686858
Target:  5'- uGGGCGacucgaCCGUgCCGCGCCgccGCAgCUcGUCg -3'
miRNA:   3'- -CCCGC------GGCG-GGCGUGGa--CGUgGA-CAG- -5'
14167 5' -63.6 NC_003521.1 + 53532 0.66 0.686858
Target:  5'- uGGUGCUGUCCGCuCCgggucgagGUGCCgcUGUCg -3'
miRNA:   3'- cCCGCGGCGGGCGuGGa-------CGUGG--ACAG- -5'
14167 5' -63.6 NC_003521.1 + 129624 0.66 0.686858
Target:  5'- cGGCGCCaucGCCCagccCACCguccgcgGCGCC-GUCg -3'
miRNA:   3'- cCCGCGG---CGGGc---GUGGa------CGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 90190 0.66 0.686858
Target:  5'- -cGCGCaCGCCCcCGCCUGCGCa---- -3'
miRNA:   3'- ccCGCG-GCGGGcGUGGACGUGgacag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.