miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 3' -53.5 NC_003521.1 + 166136 0.66 0.989897
Target:  5'- gGCGCcGCCGucGCUgcugcuugcgguagaGCGAGCGCAgGg -3'
miRNA:   3'- gCGUGaUGGUcuCGA---------------UGUUCGCGUgC- -5'
14172 3' -53.5 NC_003521.1 + 232484 0.66 0.989897
Target:  5'- aGCGCUACCccAGCUucguCAagcucaacggggucaAGCGCugGa -3'
miRNA:   3'- gCGUGAUGGucUCGAu---GU---------------UCGCGugC- -5'
14172 3' -53.5 NC_003521.1 + 214598 0.66 0.989374
Target:  5'- gGCACcggUACgAGAGCUGCGGGUaGCcCa -3'
miRNA:   3'- gCGUG---AUGgUCUCGAUGUUCG-CGuGc -5'
14172 3' -53.5 NC_003521.1 + 129986 0.66 0.989374
Target:  5'- cCGuCGCUGCCGcuGCgccgGCGgcGGCGCGCa -3'
miRNA:   3'- -GC-GUGAUGGUcuCGa---UGU--UCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 217397 0.66 0.989374
Target:  5'- gGCACcGCCAG-GCUGagcGGCgGCAUGa -3'
miRNA:   3'- gCGUGaUGGUCuCGAUgu-UCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 103113 0.66 0.989374
Target:  5'- gGCAg-GCgaAGAGCUgGCGcAGCGCGCGg -3'
miRNA:   3'- gCGUgaUGg-UCUCGA-UGU-UCGCGUGC- -5'
14172 3' -53.5 NC_003521.1 + 130803 0.66 0.989374
Target:  5'- gCGCGCccACgAGAGC--CGGGUGCACa -3'
miRNA:   3'- -GCGUGa-UGgUCUCGauGUUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 168937 0.66 0.989374
Target:  5'- aGUAcCUGCU-GAGCUACugggaGAGCcGCACGg -3'
miRNA:   3'- gCGU-GAUGGuCUCGAUG-----UUCG-CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 166322 0.66 0.989374
Target:  5'- cCGCucuGCU-CCAGcAGCUGCGcgaagucGCGCACa -3'
miRNA:   3'- -GCG---UGAuGGUC-UCGAUGUu------CGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 175642 0.66 0.989374
Target:  5'- gGCACgGCgAGAGCguauCGuuGCGCACu -3'
miRNA:   3'- gCGUGaUGgUCUCGau--GUu-CGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 205241 0.66 0.989374
Target:  5'- uCGCugUGCCAGGGCgguUAgGAGauCGCAg- -3'
miRNA:   3'- -GCGugAUGGUCUCG---AUgUUC--GCGUgc -5'
14172 3' -53.5 NC_003521.1 + 87908 0.66 0.98924
Target:  5'- gCGCACgcugaACCAGAcCUGgGAGCaccgcguGCACGa -3'
miRNA:   3'- -GCGUGa----UGGUCUcGAUgUUCG-------CGUGC- -5'
14172 3' -53.5 NC_003521.1 + 222622 0.66 0.98924
Target:  5'- cCGCG--GCCgacaugugaucgaAGGGCcgGCAGGCGCGCa -3'
miRNA:   3'- -GCGUgaUGG-------------UCUCGa-UGUUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 179050 0.66 0.987974
Target:  5'- aCGCAC-ACgAGAGC-AgAAGCGUcaGCGg -3'
miRNA:   3'- -GCGUGaUGgUCUCGaUgUUCGCG--UGC- -5'
14172 3' -53.5 NC_003521.1 + 60693 0.66 0.987974
Target:  5'- cCGCGCgggggACCcgGGGGCggcGCGGGuCGCACc -3'
miRNA:   3'- -GCGUGa----UGG--UCUCGa--UGUUC-GCGUGc -5'
14172 3' -53.5 NC_003521.1 + 44870 0.66 0.987974
Target:  5'- -cCGCUGCCAGAGCcuguGGCcCACGc -3'
miRNA:   3'- gcGUGAUGGUCUCGauguUCGcGUGC- -5'
14172 3' -53.5 NC_003521.1 + 89532 0.66 0.987974
Target:  5'- gCGCGCgucggaacCCAG-GCUGCGGGCcCACu -3'
miRNA:   3'- -GCGUGau------GGUCuCGAUGUUCGcGUGc -5'
14172 3' -53.5 NC_003521.1 + 30251 0.66 0.987375
Target:  5'- cCGCGCgguUGCCGuGGCgcagcugacccugGCGGGCGCGCu -3'
miRNA:   3'- -GCGUG---AUGGUcUCGa------------UGUUCGCGUGc -5'
14172 3' -53.5 NC_003521.1 + 103275 0.66 0.987068
Target:  5'- uGCGCcagaaggaguugacgUACCAGAGCacgUGgAAGCGgACGc -3'
miRNA:   3'- gCGUG---------------AUGGUCUCG---AUgUUCGCgUGC- -5'
14172 3' -53.5 NC_003521.1 + 44475 0.66 0.986912
Target:  5'- aCGCACUACCuGcacgcgcuggaaaucGAGCUGCAgccgccgucgucaGGCgGCGCa -3'
miRNA:   3'- -GCGUGAUGG-U---------------CUCGAUGU-------------UCG-CGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.