miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 3' -57.6 NC_003521.1 + 142513 0.66 0.944704
Target:  5'- cGUGGcCGCCgccaccacuuccUCCUCUUCCcugaggagugacggcUUG-UCGCCc -3'
miRNA:   3'- -CGCC-GCGG------------AGGAGAAGG---------------AGCaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 75989 0.66 0.942994
Target:  5'- cUGGCGCCggccgccgguUCCUCcUCCcccgCGggCGCUc -3'
miRNA:   3'- cGCCGCGG----------AGGAGaAGGa---GCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 221357 0.66 0.942994
Target:  5'- uGCGGCGgUagaggaggggUCCUCgucgUCCUCcucUUCGUCu -3'
miRNA:   3'- -CGCCGCgG----------AGGAGa---AGGAGc--AAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 94156 0.66 0.942994
Target:  5'- uGCGGUcgGCUUCgUUgccgUCCUCc-UCGCCg -3'
miRNA:   3'- -CGCCG--CGGAGgAGa---AGGAGcaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 21411 0.66 0.942994
Target:  5'- aCGGC-CCUCuggcagcuaCUCggCCUCGUcgugcccgUCGCCu -3'
miRNA:   3'- cGCCGcGGAG---------GAGaaGGAGCA--------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 120977 0.66 0.942994
Target:  5'- uGCGGUccGCCagCUCgUCCUCGUcggagucggaGCCg -3'
miRNA:   3'- -CGCCG--CGGagGAGaAGGAGCAag--------CGG- -5'
14183 3' -57.6 NC_003521.1 + 223303 0.66 0.942994
Target:  5'- aGCGGaugGCgUCCUCgcagCgCUCGUcgCGCUg -3'
miRNA:   3'- -CGCCg--CGgAGGAGaa--G-GAGCAa-GCGG- -5'
14183 3' -57.6 NC_003521.1 + 42577 0.66 0.942994
Target:  5'- gGCGGCcgaGUCUCCUUUucUCCUagucuauuaccaCGgcCGCCg -3'
miRNA:   3'- -CGCCG---CGGAGGAGA--AGGA------------GCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 130110 0.66 0.942994
Target:  5'- cCGG-GCCUCUUCUgccccugcgUCgUCGgcggCGCCg -3'
miRNA:   3'- cGCCgCGGAGGAGA---------AGgAGCaa--GCGG- -5'
14183 3' -57.6 NC_003521.1 + 175122 0.66 0.942994
Target:  5'- cGCGGCGCCgCUg--UCCUUc-UUGCCu -3'
miRNA:   3'- -CGCCGCGGaGGagaAGGAGcaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 121661 0.66 0.942994
Target:  5'- uGC-GCGCCggCCUgUUUCCUCGgaggGCCg -3'
miRNA:   3'- -CGcCGCGGa-GGA-GAAGGAGCaag-CGG- -5'
14183 3' -57.6 NC_003521.1 + 172446 0.66 0.938572
Target:  5'- aCGGCGuccaCCUCgCUCUUcaCCUCGUggUUGCg -3'
miRNA:   3'- cGCCGC----GGAG-GAGAA--GGAGCA--AGCGg -5'
14183 3' -57.6 NC_003521.1 + 92143 0.66 0.938572
Target:  5'- gGCGGgGCUUCCcggcucCUUCCacCGgcUCGCCc -3'
miRNA:   3'- -CGCCgCGGAGGa-----GAAGGa-GCa-AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 127446 0.66 0.938572
Target:  5'- cGCGGCGuCCgccguaacCCUCcUCCUCGcccccgGCCc -3'
miRNA:   3'- -CGCCGC-GGa-------GGAGaAGGAGCaag---CGG- -5'
14183 3' -57.6 NC_003521.1 + 24266 0.66 0.938118
Target:  5'- gGCGGCGaCCUggaucucCCUCggcaggUCCaUCGguaUCGCUu -3'
miRNA:   3'- -CGCCGC-GGA-------GGAGa-----AGG-AGCa--AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 201973 0.66 0.935816
Target:  5'- aCGaUGCCUCguccucagccaggcuCUCUUCCUCGgaacacggCGCCg -3'
miRNA:   3'- cGCcGCGGAG---------------GAGAAGGAGCaa------GCGG- -5'
14183 3' -57.6 NC_003521.1 + 1746 0.66 0.935816
Target:  5'- aCGaUGCCUCguccucagccaggcuCUCUUCCUCGgaacacggCGCCg -3'
miRNA:   3'- cGCcGCGGAG---------------GAGAAGGAGCaa------GCGG- -5'
14183 3' -57.6 NC_003521.1 + 187651 0.66 0.933936
Target:  5'- aCGGCGUCgCCgaccUCCUCGc-CGCCg -3'
miRNA:   3'- cGCCGCGGaGGaga-AGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 213089 0.66 0.933936
Target:  5'- cGCGGCGCucguuCUCCUCUgUCUU--UCuGCCu -3'
miRNA:   3'- -CGCCGCG-----GAGGAGAaGGAGcaAG-CGG- -5'
14183 3' -57.6 NC_003521.1 + 88951 0.66 0.933936
Target:  5'- aGCGagaGCGCCgccagaaCCUCUcgcgUCUCG-UCGCCc -3'
miRNA:   3'- -CGC---CGCGGa------GGAGAa---GGAGCaAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.