miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 199668 0.66 0.920626
Target:  5'- aGUCGCGuaGGccaguAGUCGCGGCGua-GCa -3'
miRNA:   3'- -CGGCGCuaCCu----UCGGCGCCGCuagCG- -5'
14189 3' -58.5 NC_003521.1 + 167723 0.66 0.920626
Target:  5'- gGCCaCGGUGGAuugcguggcGCUGCGGUGGcCGg -3'
miRNA:   3'- -CGGcGCUACCUu--------CGGCGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 131125 0.66 0.920626
Target:  5'- uGCCGgGAagGGAcAGCgCGaccccuCGGCcGAUCGCa -3'
miRNA:   3'- -CGGCgCUa-CCU-UCG-GC------GCCG-CUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 45768 0.66 0.920626
Target:  5'- aCCGCGucaGGAAGCgGCGGaCGGgaCGa -3'
miRNA:   3'- cGGCGCua-CCUUCGgCGCC-GCUa-GCg -5'
14189 3' -58.5 NC_003521.1 + 214161 0.66 0.920626
Target:  5'- aGCCGCgGAUGGcuuGGUCGaCGGgcaguuCGGUgGCa -3'
miRNA:   3'- -CGGCG-CUACCu--UCGGC-GCC------GCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 224198 0.66 0.920626
Target:  5'- cGCCGCGAca-GAGCCaGCGGUacuGAcgcccguagUCGCg -3'
miRNA:   3'- -CGGCGCUaccUUCGG-CGCCG---CU---------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 39886 0.66 0.920626
Target:  5'- cGuuGgGGUGGGcgugcGGUCGUcccGGCGggCGCg -3'
miRNA:   3'- -CggCgCUACCU-----UCGGCG---CCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 53182 0.66 0.920626
Target:  5'- cGCCGaugaaGAUGGccAGCgGCGcGCGGcccggcUCGCc -3'
miRNA:   3'- -CGGCg----CUACCu-UCGgCGC-CGCU------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 124036 0.66 0.920626
Target:  5'- gGCCGUaGAcGGccagcguGCCGCGGCGG-CGg -3'
miRNA:   3'- -CGGCG-CUaCCuu-----CGGCGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 7642 0.66 0.920626
Target:  5'- aCCGaCGGUaacGGcGGCCGCcacGGCGG-CGCg -3'
miRNA:   3'- cGGC-GCUA---CCuUCGGCG---CCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 240113 0.66 0.920626
Target:  5'- cGuuGgGGUGGGcgugcGGUCGUcccGGCGggCGCg -3'
miRNA:   3'- -CggCgCUACCU-----UCGGCG---CCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 123539 0.66 0.917417
Target:  5'- -gCGUGAgGGGAGCCGgCaccacggccgacgacGGCGGUgGCg -3'
miRNA:   3'- cgGCGCUaCCUUCGGC-G---------------CCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 148409 0.66 0.915234
Target:  5'- -gUGCGA-GGGAGCCaugguGCGGgCGGcCGCg -3'
miRNA:   3'- cgGCGCUaCCUUCGG-----CGCC-GCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 12337 0.66 0.915234
Target:  5'- uGCUGCGAggcuauggugcUGGgcGUgGUGGgCGAgUCGCu -3'
miRNA:   3'- -CGGCGCU-----------ACCuuCGgCGCC-GCU-AGCG- -5'
14189 3' -58.5 NC_003521.1 + 129348 0.66 0.915234
Target:  5'- cGCCGCGAaGGAgggaaaGGCCcguaGCaGGCGA-CGg -3'
miRNA:   3'- -CGGCGCUaCCU------UCGG----CG-CCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 184922 0.66 0.915234
Target:  5'- cGCCGCcGUcGGAGGgU-CGGCGAcCGCg -3'
miRNA:   3'- -CGGCGcUA-CCUUCgGcGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 59557 0.66 0.915234
Target:  5'- cCCGCGuccGgcGCCGCGGgGGuuUCGUc -3'
miRNA:   3'- cGGCGCuacCuuCGGCGCCgCU--AGCG- -5'
14189 3' -58.5 NC_003521.1 + 43480 0.66 0.915234
Target:  5'- cGCgGCGGccgUGcuGGCCGCGGCGGccaacauccgUCaGCg -3'
miRNA:   3'- -CGgCGCU---ACcuUCGGCGCCGCU----------AG-CG- -5'
14189 3' -58.5 NC_003521.1 + 177465 0.66 0.915234
Target:  5'- aGCUGCuGAcGGucugcgcGGCCGUGGagguggGAUCGCa -3'
miRNA:   3'- -CGGCG-CUaCCu------UCGGCGCCg-----CUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 200035 0.66 0.915234
Target:  5'- aCCGCGccGGGAGUC-CGGa-GUCGCc -3'
miRNA:   3'- cGGCGCuaCCUUCGGcGCCgcUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.