miRNA display CGI


Results 1 - 20 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 119747 0.65 0.945496
Target:  5'- cCGCguaUGCGGCagcuggaguACCAGCAcaccugggaccggcGCAGCgGCg -3'
miRNA:   3'- aGCG---AUGCCG---------UGGUCGU--------------UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 91198 0.65 0.945496
Target:  5'- cUCGCcgGCGGCGuCCAGCGccguuucgcgcaugAgGGCgUGCa -3'
miRNA:   3'- -AGCGa-UGCCGU-GGUCGU--------------UgUCG-ACGa -5'
14195 3' -56.4 NC_003521.1 + 21709 0.66 0.944185
Target:  5'- gCGCUACGGCGCUgcucauguGGCuggugacgaugcccgAACAggucucGCUGCUc -3'
miRNA:   3'- aGCGAUGCCGUGG--------UCG---------------UUGU------CGACGA- -5'
14195 3' -56.4 NC_003521.1 + 109483 0.66 0.942404
Target:  5'- cUUGCgACGGCACgGgGCGAagcGCUGCa -3'
miRNA:   3'- -AGCGaUGCCGUGgU-CGUUgu-CGACGa -5'
14195 3' -56.4 NC_003521.1 + 155149 0.66 0.942404
Target:  5'- gCGCgUGCuGGaCGCCGGCucggAACAGCUgGCg -3'
miRNA:   3'- aGCG-AUG-CC-GUGGUCG----UUGUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 52241 0.66 0.942404
Target:  5'- -gGCUACaguugGGCAgCGGCAgGCGGUUGUUg -3'
miRNA:   3'- agCGAUG-----CCGUgGUCGU-UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 21591 0.66 0.942404
Target:  5'- gCGCUGCugaccuGGguCCuGCAACucuGCUGCc -3'
miRNA:   3'- aGCGAUG------CCguGGuCGUUGu--CGACGa -5'
14195 3' -56.4 NC_003521.1 + 220061 0.66 0.942404
Target:  5'- aCGCcaggaaggACaGCACCAGCAgcgcguacacGCAGCUGa- -3'
miRNA:   3'- aGCGa-------UGcCGUGGUCGU----------UGUCGACga -5'
14195 3' -56.4 NC_003521.1 + 96652 0.66 0.942404
Target:  5'- gCGCggcagGCGGCGCCGGCGu--GCUugaagaGCa -3'
miRNA:   3'- aGCGa----UGCCGUGGUCGUuguCGA------CGa -5'
14195 3' -56.4 NC_003521.1 + 75618 0.66 0.942404
Target:  5'- gCGCcACGGCucagucGCCgacgaugacgacGGCAACAGCgGCg -3'
miRNA:   3'- aGCGaUGCCG------UGG------------UCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 141452 0.66 0.942404
Target:  5'- uUCGCcgACGacCACCAGCAacaACAGCaGCc -3'
miRNA:   3'- -AGCGa-UGCc-GUGGUCGU---UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 198213 0.66 0.942404
Target:  5'- -gGCgACGGCGCCGcCGGCGGCcGUg -3'
miRNA:   3'- agCGaUGCCGUGGUcGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 74776 0.66 0.937792
Target:  5'- -gGCUggaguaugacgACGGCGgCAGCggUAGCgGCg -3'
miRNA:   3'- agCGA-----------UGCCGUgGUCGuuGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 101504 0.66 0.937792
Target:  5'- -aGCgGCGGCcagacgcggccgACCAGCAGgcGCUGCa -3'
miRNA:   3'- agCGaUGCCG------------UGGUCGUUguCGACGa -5'
14195 3' -56.4 NC_003521.1 + 105829 0.66 0.937792
Target:  5'- aCGCcACGGCcuGCCccuGCuacCGGCUGCa -3'
miRNA:   3'- aGCGaUGCCG--UGGu--CGuu-GUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 30324 0.66 0.937792
Target:  5'- gCGCUccagcaACuGCGCCAGCGAguCGGCgGCg -3'
miRNA:   3'- aGCGA------UGcCGUGGUCGUU--GUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 33940 0.66 0.937792
Target:  5'- cUGCUguGCGGCguGCgCGGCgAGCAGCUGg- -3'
miRNA:   3'- aGCGA--UGCCG--UG-GUCG-UUGUCGACga -5'
14195 3' -56.4 NC_003521.1 + 192296 0.66 0.937792
Target:  5'- uUCGU--CGGCACCguccgcGGUAGCGGCgucgGCg -3'
miRNA:   3'- -AGCGauGCCGUGG------UCGUUGUCGa---CGa -5'
14195 3' -56.4 NC_003521.1 + 36286 0.66 0.937792
Target:  5'- gCGCUGC-GCACCucggaccGCGACAacuacgggcGCUGCg -3'
miRNA:   3'- aGCGAUGcCGUGGu------CGUUGU---------CGACGa -5'
14195 3' -56.4 NC_003521.1 + 152355 0.66 0.937792
Target:  5'- aCGCUGCucuGGgGCCGGCcggGGCGGC-GCg -3'
miRNA:   3'- aGCGAUG---CCgUGGUCG---UUGUCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.