miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 239982 0.66 0.793727
Target:  5'- cCAGCAGUcuucgGGGuaGUCGGUGCCu--- -3'
miRNA:   3'- cGUCGUCG-----UCCggCAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 163771 0.66 0.793727
Target:  5'- gGCGGCGGCAacaacGGUag-CGGCGCCa--- -3'
miRNA:   3'- -CGUCGUCGU-----CCGgcaGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 228707 0.66 0.793727
Target:  5'- uGCAGCcGCAGGUCGcagaucauguugUCGggcuGCGUgGUGAg -3'
miRNA:   3'- -CGUCGuCGUCCGGC------------AGC----CGCGgCACU- -5'
14195 5' -61.6 NC_003521.1 + 238670 0.66 0.793727
Target:  5'- uGCAGUugcugcugcuggAGCAGGU---CGGCGgCCGUGGg -3'
miRNA:   3'- -CGUCG------------UCGUCCGgcaGCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 97 0.66 0.793727
Target:  5'- gGCGuGCAgGgAGGCCGaagCGGCgGCCG-GAg -3'
miRNA:   3'- -CGU-CGU-CgUCCGGCa--GCCG-CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 97278 0.66 0.793727
Target:  5'- gGCGGCuGCugcucgucGCCGgCGGCGCgCGUGc -3'
miRNA:   3'- -CGUCGuCGuc------CGGCaGCCGCG-GCACu -5'
14195 5' -61.6 NC_003521.1 + 240646 0.66 0.793727
Target:  5'- gGCGuGCAgGgAGGCCGaagCGGCgGCCG-GAg -3'
miRNA:   3'- -CGU-CGU-CgUCCGGCa--GCCG-CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 118008 0.66 0.793727
Target:  5'- gGUAGCGGCGGcgugucgcuGCCGcgggacUCGGUGCUGgGAc -3'
miRNA:   3'- -CGUCGUCGUC---------CGGC------AGCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 30435 0.66 0.793727
Target:  5'- cCAGCugaacauguccaGGC-GGCCGagGGUGCCGaUGAc -3'
miRNA:   3'- cGUCG------------UCGuCCGGCagCCGCGGC-ACU- -5'
14195 5' -61.6 NC_003521.1 + 155264 0.66 0.793727
Target:  5'- gGCGGCGGCGGcGCC-UCaGGC-CCGUc- -3'
miRNA:   3'- -CGUCGUCGUC-CGGcAG-CCGcGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 38164 0.66 0.793727
Target:  5'- uGUAGguGCAGGgCGUCccagcGGgGCCGc-- -3'
miRNA:   3'- -CGUCguCGUCCgGCAG-----CCgCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 38443 0.66 0.793727
Target:  5'- uGCAGUugcugcugcuggAGCAGGU---CGGCGgCCGUGGg -3'
miRNA:   3'- -CGUCG------------UCGUCCGgcaGCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 40419 0.66 0.793727
Target:  5'- gGCGuGCAgGgAGGCCGaagCGGCgGCCG-GAg -3'
miRNA:   3'- -CGU-CGU-CgUCCGGCa--GCCG-CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 69731 0.66 0.793727
Target:  5'- cGCGGUaacGGCGGGCgGggaGGCgGCgGUGGc -3'
miRNA:   3'- -CGUCG---UCGUCCGgCag-CCG-CGgCACU- -5'
14195 5' -61.6 NC_003521.1 + 42612 0.66 0.793727
Target:  5'- aCGGCcgccGGCGGcGCCGUCGcCGCCaUGGa -3'
miRNA:   3'- cGUCG----UCGUC-CGGCAGCcGCGGcACU- -5'
14195 5' -61.6 NC_003521.1 + 17458 0.66 0.792877
Target:  5'- cGCGGCAGCgcucggAGGagagacgacggcaCCGguagCGGCGCCGc-- -3'
miRNA:   3'- -CGUCGUCG------UCC-------------GGCa---GCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 140352 0.66 0.792877
Target:  5'- gGCGGUAGCAacGGCCGucaccacucuucuUCGGCgGCCcUGc -3'
miRNA:   3'- -CGUCGUCGU--CCGGC-------------AGCCG-CGGcACu -5'
14195 5' -61.6 NC_003521.1 + 127441 0.66 0.792877
Target:  5'- aGCGGCucgucggccAGCuGGCCGUUGuugacgcccgccaGCGCCGaGAu -3'
miRNA:   3'- -CGUCG---------UCGuCCGGCAGC-------------CGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 91925 0.66 0.785172
Target:  5'- cGCGGCGGCGcuCC-UCGGCGUCGg-- -3'
miRNA:   3'- -CGUCGUCGUccGGcAGCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 120237 0.66 0.785172
Target:  5'- gGCAGgAGCcGGCgG-CcGCGCCGUGc -3'
miRNA:   3'- -CGUCgUCGuCCGgCaGcCGCGGCACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.