Results 1 - 20 of 304 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 163771 | 0.66 | 0.793727 |
Target: 5'- gGCGGCGGCAacaacGGUag-CGGCGCCa--- -3' miRNA: 3'- -CGUCGUCGU-----CCGgcaGCCGCGGcacu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 228707 | 0.66 | 0.793727 |
Target: 5'- uGCAGCcGCAGGUCGcagaucauguugUCGggcuGCGUgGUGAg -3' miRNA: 3'- -CGUCGuCGUCCGGC------------AGC----CGCGgCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 238670 | 0.66 | 0.793727 |
Target: 5'- uGCAGUugcugcugcuggAGCAGGU---CGGCGgCCGUGGg -3' miRNA: 3'- -CGUCG------------UCGUCCGgcaGCCGC-GGCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 97 | 0.66 | 0.793727 |
Target: 5'- gGCGuGCAgGgAGGCCGaagCGGCgGCCG-GAg -3' miRNA: 3'- -CGU-CGU-CgUCCGGCa--GCCG-CGGCaCU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 97278 | 0.66 | 0.793727 |
Target: 5'- gGCGGCuGCugcucgucGCCGgCGGCGCgCGUGc -3' miRNA: 3'- -CGUCGuCGuc------CGGCaGCCGCG-GCACu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 240646 | 0.66 | 0.793727 |
Target: 5'- gGCGuGCAgGgAGGCCGaagCGGCgGCCG-GAg -3' miRNA: 3'- -CGU-CGU-CgUCCGGCa--GCCG-CGGCaCU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 155264 | 0.66 | 0.793727 |
Target: 5'- gGCGGCGGCGGcGCC-UCaGGC-CCGUc- -3' miRNA: 3'- -CGUCGUCGUC-CGGcAG-CCGcGGCAcu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 30435 | 0.66 | 0.793727 |
Target: 5'- cCAGCugaacauguccaGGC-GGCCGagGGUGCCGaUGAc -3' miRNA: 3'- cGUCG------------UCGuCCGGCagCCGCGGC-ACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 239982 | 0.66 | 0.793727 |
Target: 5'- cCAGCAGUcuucgGGGuaGUCGGUGCCu--- -3' miRNA: 3'- cGUCGUCG-----UCCggCAGCCGCGGcacu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 118008 | 0.66 | 0.793727 |
Target: 5'- gGUAGCGGCGGcgugucgcuGCCGcgggacUCGGUGCUGgGAc -3' miRNA: 3'- -CGUCGUCGUC---------CGGC------AGCCGCGGCaCU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 40419 | 0.66 | 0.793727 |
Target: 5'- gGCGuGCAgGgAGGCCGaagCGGCgGCCG-GAg -3' miRNA: 3'- -CGU-CGU-CgUCCGGCa--GCCG-CGGCaCU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 38443 | 0.66 | 0.793727 |
Target: 5'- uGCAGUugcugcugcuggAGCAGGU---CGGCGgCCGUGGg -3' miRNA: 3'- -CGUCG------------UCGUCCGgcaGCCGC-GGCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 42612 | 0.66 | 0.793727 |
Target: 5'- aCGGCcgccGGCGGcGCCGUCGcCGCCaUGGa -3' miRNA: 3'- cGUCG----UCGUC-CGGCAGCcGCGGcACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 38164 | 0.66 | 0.793727 |
Target: 5'- uGUAGguGCAGGgCGUCccagcGGgGCCGc-- -3' miRNA: 3'- -CGUCguCGUCCgGCAG-----CCgCGGCacu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 69731 | 0.66 | 0.793727 |
Target: 5'- cGCGGUaacGGCGGGCgGggaGGCgGCgGUGGc -3' miRNA: 3'- -CGUCG---UCGUCCGgCag-CCG-CGgCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 17458 | 0.66 | 0.792877 |
Target: 5'- cGCGGCAGCgcucggAGGagagacgacggcaCCGguagCGGCGCCGc-- -3' miRNA: 3'- -CGUCGUCG------UCC-------------GGCa---GCCGCGGCacu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 140352 | 0.66 | 0.792877 |
Target: 5'- gGCGGUAGCAacGGCCGucaccacucuucuUCGGCgGCCcUGc -3' miRNA: 3'- -CGUCGUCGU--CCGGC-------------AGCCG-CGGcACu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 127441 | 0.66 | 0.792877 |
Target: 5'- aGCGGCucgucggccAGCuGGCCGUUGuugacgcccgccaGCGCCGaGAu -3' miRNA: 3'- -CGUCG---------UCGuCCGGCAGC-------------CGCGGCaCU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 91925 | 0.66 | 0.785172 |
Target: 5'- cGCGGCGGCGcuCC-UCGGCGUCGg-- -3' miRNA: 3'- -CGUCGUCGUccGGcAGCCGCGGCacu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 120237 | 0.66 | 0.785172 |
Target: 5'- gGCAGgAGCcGGCgG-CcGCGCCGUGc -3' miRNA: 3'- -CGUCgUCGuCCGgCaGcCGCGGCACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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