miRNA display CGI


Results 1 - 20 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 212213 0.66 0.892636
Target:  5'- cGGCGuGCAGCAccacGUAGCGG-GUGAgGuCg -3'
miRNA:   3'- -UCGC-CGUUGU----CGUCGCCgCACUgCuG- -5'
14197 3' -58.5 NC_003521.1 + 44906 0.66 0.892636
Target:  5'- cAGaCGGC----GCGGCGGCGagGACGAa -3'
miRNA:   3'- -UC-GCCGuuguCGUCGCCGCa-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 162865 0.66 0.892636
Target:  5'- cGUGGcCAACGcGCAGgGGCGcgcgcagGugGGCc -3'
miRNA:   3'- uCGCC-GUUGU-CGUCgCCGCa------CugCUG- -5'
14197 3' -58.5 NC_003521.1 + 238459 0.66 0.892636
Target:  5'- gGGCGGCcuCGGCgGGCGGgGcgGA-GACg -3'
miRNA:   3'- -UCGCCGuuGUCG-UCGCCgCa-CUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 164540 0.66 0.892636
Target:  5'- -cCGGacucGCAGCAGCGGCa--GCGACu -3'
miRNA:   3'- ucGCCgu--UGUCGUCGCCGcacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 87065 0.66 0.892636
Target:  5'- cAGCGGguGgaaGGCGGCGGCGUaGgGGu -3'
miRNA:   3'- -UCGCCguUg--UCGUCGCCGCAcUgCUg -5'
14197 3' -58.5 NC_003521.1 + 195194 0.66 0.892636
Target:  5'- gAGcCGGCGGCGGUGGCcgucugcgucGGCGcUGAUGuCg -3'
miRNA:   3'- -UC-GCCGUUGUCGUCG----------CCGC-ACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 38231 0.66 0.892636
Target:  5'- gGGCGGCcuCGGCgGGCGGgGcgGA-GACg -3'
miRNA:   3'- -UCGCCGuuGUCG-UCGCCgCa-CUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 116394 0.66 0.892636
Target:  5'- cGUGGUggAACguugguugGGUAGCGGCGgcGAUGGCa -3'
miRNA:   3'- uCGCCG--UUG--------UCGUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 199379 0.66 0.892636
Target:  5'- cGUGGUguaGACGGCGGCGGgG-GuCGAg -3'
miRNA:   3'- uCGCCG---UUGUCGUCGCCgCaCuGCUg -5'
14197 3' -58.5 NC_003521.1 + 154292 0.66 0.892636
Target:  5'- gAGCGG-GGCGGCA-CGGCGUccggGGcCGACg -3'
miRNA:   3'- -UCGCCgUUGUCGUcGCCGCA----CU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 128028 0.66 0.892636
Target:  5'- cGCGGCAccucgcGCcGCAcGCGGUagaaGUGGcCGACg -3'
miRNA:   3'- uCGCCGU------UGuCGU-CGCCG----CACU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 28058 0.66 0.88611
Target:  5'- aGGCGGgggagaGACAGgAGgGGgGagGACGACg -3'
miRNA:   3'- -UCGCCg-----UUGUCgUCgCCgCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 19727 0.66 0.88611
Target:  5'- cGCuGCugacCAGC-GUGGCGgUGACGGCg -3'
miRNA:   3'- uCGcCGuu--GUCGuCGCCGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 214980 0.66 0.88611
Target:  5'- uGGCGGCGGCcaggggggugcgAGcCAGCGGCGUcuCGuaACg -3'
miRNA:   3'- -UCGCCGUUG------------UC-GUCGCCGCAcuGC--UG- -5'
14197 3' -58.5 NC_003521.1 + 139438 0.66 0.88611
Target:  5'- cGUGGCcguCA--AGCGGCGcGACGGCu -3'
miRNA:   3'- uCGCCGuu-GUcgUCGCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 135509 0.66 0.88611
Target:  5'- aAGCGGCGACGucGC-GCGGCGUccccACGcCc -3'
miRNA:   3'- -UCGCCGUUGU--CGuCGCCGCAc---UGCuG- -5'
14197 3' -58.5 NC_003521.1 + 140013 0.66 0.88611
Target:  5'- gAGUGGUAgucGCGGUAGCGGcCGcagaaggccaUGAgCGGCa -3'
miRNA:   3'- -UCGCCGU---UGUCGUCGCC-GC----------ACU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 19905 0.66 0.88611
Target:  5'- cGGCGuGCGGgAGCGGCuGGUGguccugGACGcCg -3'
miRNA:   3'- -UCGC-CGUUgUCGUCG-CCGCa-----CUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 115382 0.66 0.88611
Target:  5'- gGGcCGGCAuguGCAG-GGCGcgGGCGGCc -3'
miRNA:   3'- -UC-GCCGUuguCGUCgCCGCa-CUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.