miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 148817 0.66 0.97689
Target:  5'- -cGCCGcCGCGccucgccgcucccgcUCCGUUCg--CGCCGg -3'
miRNA:   3'- aaUGGCuGUGC---------------AGGCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 1063 0.66 0.97593
Target:  5'- -cACCGACcuGCG-CCaGCUC--UCGCCGc -3'
miRNA:   3'- aaUGGCUG--UGCaGG-CGAGauAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 91030 0.66 0.97593
Target:  5'- -gGCCGGC-CGUUCGCggaa-CGCCGu -3'
miRNA:   3'- aaUGGCUGuGCAGGCGagauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 201291 0.66 0.97593
Target:  5'- -cACCGACcuGCG-CCaGCUC--UCGCCGc -3'
miRNA:   3'- aaUGGCUG--UGCaGG-CGAGauAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 133329 0.66 0.97593
Target:  5'- -gGCCGAagaccaGUgUGCUCUGggCGCCGg -3'
miRNA:   3'- aaUGGCUgug---CAgGCGAGAUa-GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 122819 0.66 0.97593
Target:  5'- -cAgCGACACGccgCCGCUaccGUCGUCGu -3'
miRNA:   3'- aaUgGCUGUGCa--GGCGAga-UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 41852 0.66 0.97593
Target:  5'- -gGCUGACG-GUCagcaCGCUCUcgCGCCu -3'
miRNA:   3'- aaUGGCUGUgCAG----GCGAGAuaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 122650 0.66 0.975191
Target:  5'- uUUGCCGGCGggcguCGUCUGCggcggugggguggcGUCGCCGg -3'
miRNA:   3'- -AAUGGCUGU-----GCAGGCGaga-----------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 225757 0.66 0.973404
Target:  5'- gUGCUGuugcaGCACGcgCCGCUCgcgcucgCGCCGc -3'
miRNA:   3'- aAUGGC-----UGUGCa-GGCGAGaua----GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 53652 0.66 0.973404
Target:  5'- -gGCCGucuccGCACGuugcuUCCGCUCcUGcCGCCGc -3'
miRNA:   3'- aaUGGC-----UGUGC-----AGGCGAG-AUaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 190544 0.66 0.973404
Target:  5'- ---aCGGCAUGUCCGUgaag-CGCCGc -3'
miRNA:   3'- aaugGCUGUGCAGGCGagauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 53526 0.66 0.973404
Target:  5'- -gGCCGAUgguGCuGUCCGCUCcggGUCgagguGCCGc -3'
miRNA:   3'- aaUGGCUG---UG-CAGGCGAGa--UAG-----CGGC- -5'
14197 5' -55.2 NC_003521.1 + 70733 0.66 0.970691
Target:  5'- gUACCGGCAcuuCGUCCaGCUgcagcgCGCCGc -3'
miRNA:   3'- aAUGGCUGU---GCAGG-CGAgaua--GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 118734 0.66 0.970691
Target:  5'- -cACCGGCACGggCUGCag-GUUGCUGg -3'
miRNA:   3'- aaUGGCUGUGCa-GGCGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 133379 0.66 0.970691
Target:  5'- -cGCCGGCACagcgcggcgGUCCGCgcUUUcgCGUCGg -3'
miRNA:   3'- aaUGGCUGUG---------CAGGCG--AGAuaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 237611 0.66 0.970691
Target:  5'- -cACCGaACACGcacacaCCGCUCggGUUGCUGu -3'
miRNA:   3'- aaUGGC-UGUGCa-----GGCGAGa-UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 123731 0.66 0.970691
Target:  5'- -aGgCGGCcuCGUCCGCUUUAauUCGCaCGg -3'
miRNA:   3'- aaUgGCUGu-GCAGGCGAGAU--AGCG-GC- -5'
14197 5' -55.2 NC_003521.1 + 109924 0.66 0.970691
Target:  5'- gUUGCCuGACGgGgggUCGaUCUGUCGCCGc -3'
miRNA:   3'- -AAUGG-CUGUgCa--GGCgAGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 30227 0.66 0.97041
Target:  5'- -gGCCGuuggcgucgcgcuGCAgGUCCGCgcgGUUGCCGu -3'
miRNA:   3'- aaUGGC-------------UGUgCAGGCGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 122535 0.66 0.967786
Target:  5'- gUugCGGCgGCGUCC-CUagagGUCGCCGc -3'
miRNA:   3'- aAugGCUG-UGCAGGcGAga--UAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.