Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 129638 | 0.69 | 0.885317 |
Target: 5'- -aGCCcAC-CGUCCGCggcgCcGUCGCCGg -3' miRNA: 3'- aaUGGcUGuGCAGGCGa---GaUAGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 108234 | 0.66 | 0.963711 |
Target: 5'- -cGCCGACGcCG-CCGCUUccaucaucuucuggUGUCGaCCGg -3' miRNA: 3'- aaUGGCUGU-GCaGGCGAG--------------AUAGC-GGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 22378 | 0.69 | 0.885317 |
Target: 5'- gUGCCGGcCAUGUccuccguggugCCGCcgCUGUCGCUGg -3' miRNA: 3'- aAUGGCU-GUGCA-----------GGCGa-GAUAGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 186519 | 0.68 | 0.932172 |
Target: 5'- -aGCaCGACGCG-CUGCUCUacGUgGCCa -3' miRNA: 3'- aaUG-GCUGUGCaGGCGAGA--UAgCGGc -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 14391 | 0.67 | 0.941627 |
Target: 5'- -aGCUGGCGCGcuacggcgugUCgCGCUCggagAUCGCCu -3' miRNA: 3'- aaUGGCUGUGC----------AG-GCGAGa---UAGCGGc -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 113582 | 0.66 | 0.967786 |
Target: 5'- -cGCCGACGag-CCGCUCU-UCGUgGa -3' miRNA: 3'- aaUGGCUGUgcaGGCGAGAuAGCGgC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 53517 | 0.67 | 0.961374 |
Target: 5'- gUUGuCCGACGCGgCCGCUCccaccgggcUGCCGa -3' miRNA: 3'- -AAU-GGCUGUGCaGGCGAGaua------GCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 180052 | 0.67 | 0.957858 |
Target: 5'- -aGCCGcaGCAUG-CCGCaCUGUCGCaCGa -3' miRNA: 3'- aaUGGC--UGUGCaGGCGaGAUAGCG-GC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 123938 | 0.67 | 0.950182 |
Target: 5'- -cGCCGGCGCG-CCGC-CgcagccgCGCCa -3' miRNA: 3'- aaUGGCUGUGCaGGCGaGaua----GCGGc -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 166019 | 0.67 | 0.950182 |
Target: 5'- -cGCCGuC-CGUCCGCguc-UCGCCGc -3' miRNA: 3'- aaUGGCuGuGCAGGCGagauAGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 110088 | 0.67 | 0.946016 |
Target: 5'- -cGCCGACACGUCCcGaCUCaguUCGUa- -3' miRNA: 3'- aaUGGCUGUGCAGG-C-GAGau-AGCGgc -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 122650 | 0.66 | 0.975191 |
Target: 5'- uUUGCCGGCGggcguCGUCUGCggcggugggguggcGUCGCCGg -3' miRNA: 3'- -AAUGGCUGU-----GCAGGCGaga-----------UAGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 74606 | 0.67 | 0.957858 |
Target: 5'- -gGCCGGCGCGccucgCCGC-Cg--CGCCa -3' miRNA: 3'- aaUGGCUGUGCa----GGCGaGauaGCGGc -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 238628 | 0.67 | 0.960688 |
Target: 5'- -gGCCGGC-CGUCCGUUCcccgaacgggcgGUUGCUGc -3' miRNA: 3'- aaUGGCUGuGCAGGCGAGa-----------UAGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 70686 | 0.67 | 0.957858 |
Target: 5'- -aACCGACgGCGUCUGCgccgcaagCUG-CGUCGg -3' miRNA: 3'- aaUGGCUG-UGCAGGCGa-------GAUaGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 192075 | 0.67 | 0.954128 |
Target: 5'- gUUugUGAgGCGUCgGCUUgugcugcagcGUCGCCGg -3' miRNA: 3'- -AAugGCUgUGCAGgCGAGa---------UAGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 210280 | 0.7 | 0.864154 |
Target: 5'- -gGCCGGCGCGUCCGUaCcg-UGCCc -3' miRNA: 3'- aaUGGCUGUGCAGGCGaGauaGCGGc -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 201522 | 0.67 | 0.961374 |
Target: 5'- -cGCCGACGaaugguUCCGCUacggCGCCGg -3' miRNA: 3'- aaUGGCUGUgc----AGGCGAgauaGCGGC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 4355 | 0.68 | 0.921809 |
Target: 5'- -cGCCGGCG-GUUCGCUC-AUCGCgGc -3' miRNA: 3'- aaUGGCUGUgCAGGCGAGaUAGCGgC- -5' |
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14197 | 5' | -55.2 | NC_003521.1 | + | 128059 | 0.68 | 0.921809 |
Target: 5'- -gGCCGACGCG-CCGCgcgaUGcCGCCc -3' miRNA: 3'- aaUGGCUGUGCaGGCGag--AUaGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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