Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14201 | 3' | -56.1 | NC_003521.1 | + | 151816 | 0.66 | 0.96931 |
Target: 5'- gGCGcCGGUGGGGcccgcggcauuucugUACCUGACCa- -3' miRNA: 3'- -CGCcGCCACCUCuaa------------GUGGACUGGcu -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 164215 | 0.66 | 0.968443 |
Target: 5'- gGCGGCGGUGGuAGcggCGgCUGGaCGGu -3' miRNA: 3'- -CGCCGCCACC-UCuaaGUgGACUgGCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 103137 | 0.66 | 0.968443 |
Target: 5'- cGCGGCGGUGcugcagCACCaGGCgGAu -3' miRNA: 3'- -CGCCGCCACcucuaaGUGGaCUGgCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 50221 | 0.66 | 0.968443 |
Target: 5'- uGCGGCuGGUGuGGAgUUACCgcUGGCUGGu -3' miRNA: 3'- -CGCCG-CCACcUCUaAGUGG--ACUGGCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 87766 | 0.66 | 0.968443 |
Target: 5'- gGCGGCGGaGGAG----GCCUGgggGCCGc -3' miRNA: 3'- -CGCCGCCaCCUCuaagUGGAC---UGGCu -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 145127 | 0.66 | 0.968443 |
Target: 5'- cCGGCaGGUGGAGcucuUUCAgCUG-CUGGa -3' miRNA: 3'- cGCCG-CCACCUCu---AAGUgGACuGGCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 31633 | 0.66 | 0.968151 |
Target: 5'- cGCGGCcgacGGUGGGG--UCAUCUGGaggcuccCCGGc -3' miRNA: 3'- -CGCCG----CCACCUCuaAGUGGACU-------GGCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 172807 | 0.66 | 0.965428 |
Target: 5'- cGUGGCGGU-GAGGcUCACgCagcugggGGCCGAc -3' miRNA: 3'- -CGCCGCCAcCUCUaAGUG-Ga------CUGGCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 82835 | 0.66 | 0.965428 |
Target: 5'- gGCGGCacaGGUGGAGGUgcccaaGCCUGuuguuGCgGGu -3' miRNA: 3'- -CGCCG---CCACCUCUAag----UGGAC-----UGgCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 72982 | 0.66 | 0.965428 |
Target: 5'- aGCGGCcGcGGGGG---GCCUGGCCGc -3' miRNA: 3'- -CGCCGcCaCCUCUaagUGGACUGGCu -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 203734 | 0.66 | 0.965428 |
Target: 5'- cGCGGUggcaguacgaGGUGGAGAUggugcccagCAgCUG-CCGGu -3' miRNA: 3'- -CGCCG----------CCACCUCUAa--------GUgGACuGGCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 144126 | 0.66 | 0.962216 |
Target: 5'- cGCGGCcuGGacGAGGUgCGCCUGGgcuCCGAg -3' miRNA: 3'- -CGCCG--CCacCUCUAaGUGGACU---GGCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 58737 | 0.66 | 0.962216 |
Target: 5'- gGCGGCGGUGcAGcagcCACUgcgGGCUGAg -3' miRNA: 3'- -CGCCGCCACcUCuaa-GUGGa--CUGGCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 44459 | 0.66 | 0.962216 |
Target: 5'- -aGGCGGUGGAaguGUUCGCCgagaACCu- -3' miRNA: 3'- cgCCGCCACCUc--UAAGUGGac--UGGcu -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 18748 | 0.66 | 0.961883 |
Target: 5'- gGCGGCGGUGGcgccgacGGGUcgCugCUGcgacgGCUGGu -3' miRNA: 3'- -CGCCGCCACC-------UCUAa-GugGAC-----UGGCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 131569 | 0.66 | 0.958802 |
Target: 5'- aCGGUGGUGGGccagaGCCUGAUCa- -3' miRNA: 3'- cGCCGCCACCUcuaagUGGACUGGcu -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 76208 | 0.66 | 0.958802 |
Target: 5'- cGCGGUGGUGGuauGAguggCGgC-GGCCGGu -3' miRNA: 3'- -CGCCGCCACCu--CUaa--GUgGaCUGGCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 164435 | 0.66 | 0.958802 |
Target: 5'- uCGGCaaGGUGGAGgg-CGCCgcgGGCCuGAg -3' miRNA: 3'- cGCCG--CCACCUCuaaGUGGa--CUGG-CU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 67275 | 0.66 | 0.958802 |
Target: 5'- -gGGCGGgcagGGAGGacagccgcugCGCCUGAcgcCCGAc -3' miRNA: 3'- cgCCGCCa---CCUCUaa--------GUGGACU---GGCU- -5' |
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14201 | 3' | -56.1 | NC_003521.1 | + | 86999 | 0.66 | 0.958802 |
Target: 5'- gGCGGCGGUGauGAGGgcCACgUG-CUGGa -3' miRNA: 3'- -CGCCGCCAC--CUCUaaGUGgACuGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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