miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14201 5' -64 NC_003521.1 + 135675 0.66 0.686374
Target:  5'- cGUCACCAccucguccuggGGGACCUCgGGgGUCu-- -3'
miRNA:   3'- aCGGUGGU-----------CCCUGGAGgCCgCGGcag -5'
14201 5' -64 NC_003521.1 + 87748 0.66 0.686374
Target:  5'- gGCC-CCGGcccGGGCC-CCGGCGgCGg- -3'
miRNA:   3'- aCGGuGGUC---CCUGGaGGCCGCgGCag -5'
14201 5' -64 NC_003521.1 + 60424 0.66 0.686374
Target:  5'- gGCCGCCAGcaccACCagcaguacUCCGGCGCCc-- -3'
miRNA:   3'- aCGGUGGUCcc--UGG--------AGGCCGCGGcag -5'
14201 5' -64 NC_003521.1 + 239991 0.66 0.686374
Target:  5'- cGCCAgCAGGaACCgcUCCGG-GCUGUUc -3'
miRNA:   3'- aCGGUgGUCCcUGG--AGGCCgCGGCAG- -5'
14201 5' -64 NC_003521.1 + 144997 0.66 0.686374
Target:  5'- aUGCCACCGaGG-CCU-CGcGCGCCGa- -3'
miRNA:   3'- -ACGGUGGUcCCuGGAgGC-CGCGGCag -5'
14201 5' -64 NC_003521.1 + 39764 0.66 0.686374
Target:  5'- cGCCAgCAGGaACCgcUCCGG-GCUGUUc -3'
miRNA:   3'- aCGGUgGUCCcUGG--AGGCCgCGGCAG- -5'
14201 5' -64 NC_003521.1 + 232986 0.66 0.686374
Target:  5'- cGCCACCcccucGuCUUCUGGCGCCGg- -3'
miRNA:   3'- aCGGUGGucc--CuGGAGGCCGCGGCag -5'
14201 5' -64 NC_003521.1 + 217607 0.66 0.686374
Target:  5'- gGaCCAgCAGGGGCgUCuCGGcCGCCaUCu -3'
miRNA:   3'- aC-GGUgGUCCCUGgAG-GCC-GCGGcAG- -5'
14201 5' -64 NC_003521.1 + 223405 0.66 0.686374
Target:  5'- gGCCGUguGGcGCC-CCGGCGCggCGUCa -3'
miRNA:   3'- aCGGUGguCCcUGGaGGCCGCG--GCAG- -5'
14201 5' -64 NC_003521.1 + 150261 0.66 0.686374
Target:  5'- gGCCugCAccgcGGccGGCCUCUcgugGGUGCUGUCg -3'
miRNA:   3'- aCGGugGU----CC--CUGGAGG----CCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 82844 0.66 0.68544
Target:  5'- cGCCGCgGGcGGcggcgucGCUaCCaGCGCCGUCg -3'
miRNA:   3'- aCGGUGgUC-CC-------UGGaGGcCGCGGCAG- -5'
14201 5' -64 NC_003521.1 + 77010 0.66 0.677949
Target:  5'- cGCCGuCCAGGGGCagcaugcgguugaggCCGGCGgugguggcgccgcuaCCGUUg -3'
miRNA:   3'- aCGGU-GGUCCCUGga-------------GGCCGC---------------GGCAG- -5'
14201 5' -64 NC_003521.1 + 124592 0.66 0.677012
Target:  5'- gGCCACCAuGGACauggacaGGCagGCCGUCu -3'
miRNA:   3'- aCGGUGGUcCCUGgagg---CCG--CGGCAG- -5'
14201 5' -64 NC_003521.1 + 74149 0.66 0.677012
Target:  5'- gGCgCGCCAcGGGGCC-CaGGUGCCGc- -3'
miRNA:   3'- aCG-GUGGU-CCCUGGaGgCCGCGGCag -5'
14201 5' -64 NC_003521.1 + 214984 0.66 0.677012
Target:  5'- gGCgGCCAGGGgggugcgaGCCagCGGCGUC-UCg -3'
miRNA:   3'- aCGgUGGUCCC--------UGGagGCCGCGGcAG- -5'
14201 5' -64 NC_003521.1 + 198006 0.66 0.677012
Target:  5'- cGCCACaguugcguuCGGGGACCguggCCGcUGCCGa- -3'
miRNA:   3'- aCGGUG---------GUCCCUGGa---GGCcGCGGCag -5'
14201 5' -64 NC_003521.1 + 102844 0.66 0.677012
Target:  5'- aGCgCGCCAGGGcGCCcguggcguaggUCUGG-GCCGUg -3'
miRNA:   3'- aCG-GUGGUCCC-UGG-----------AGGCCgCGGCAg -5'
14201 5' -64 NC_003521.1 + 48003 0.66 0.677012
Target:  5'- cGCCGCCGGGcuUCUgCGGCuGCUGcCa -3'
miRNA:   3'- aCGGUGGUCCcuGGAgGCCG-CGGCaG- -5'
14201 5' -64 NC_003521.1 + 227239 0.66 0.677012
Target:  5'- cGUCGCCAGGGggGCCaaUCGGa-CCGUCg -3'
miRNA:   3'- aCGGUGGUCCC--UGGa-GGCCgcGGCAG- -5'
14201 5' -64 NC_003521.1 + 8442 0.66 0.676073
Target:  5'- aGCCAgcgcgagaCGGuGGACCUCCgcuucgcGGUGCCGcCg -3'
miRNA:   3'- aCGGUg-------GUC-CCUGGAGG-------CCGCGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.