miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 35968 0.65 0.986689
Target:  5'- -aGGAUGGGcGACGAGGaCGA-CGaaccgggcuugguCAGCg -3'
miRNA:   3'- agUCUACUC-CUGCUCC-GCUaGC-------------GUCG- -5'
14210 3' -54.4 NC_003521.1 + 75156 0.66 0.985223
Target:  5'- -gGGAUGccuGGACGcauGGUGccagCGCGGCg -3'
miRNA:   3'- agUCUACu--CCUGCu--CCGCua--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 126626 0.66 0.985223
Target:  5'- aCGGcgauGGACGgucGGGUGAcgCGCAGCa -3'
miRNA:   3'- aGUCuacuCCUGC---UCCGCUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 236131 0.66 0.985223
Target:  5'- uUCGGGacGGGACGGGGgGGaccgcgcgacgUCGcCGGCg -3'
miRNA:   3'- -AGUCUacUCCUGCUCCgCU-----------AGC-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 99344 0.66 0.985223
Target:  5'- --uGAUGAGGAgGaAGGCGGUgagGCuGCu -3'
miRNA:   3'- aguCUACUCCUgC-UCCGCUAg--CGuCG- -5'
14210 3' -54.4 NC_003521.1 + 28956 0.66 0.985223
Target:  5'- cCGGGggGAGGAUGucuguccGCGAUCGUGGUc -3'
miRNA:   3'- aGUCUa-CUCCUGCuc-----CGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 49642 0.66 0.985223
Target:  5'- cCAGcgGGGGGCaGuGGCGcUC-CAGCc -3'
miRNA:   3'- aGUCuaCUCCUG-CuCCGCuAGcGUCG- -5'
14210 3' -54.4 NC_003521.1 + 121302 0.66 0.985223
Target:  5'- gCAGAUGAGGcCGAaGUGuUCGUGGg -3'
miRNA:   3'- aGUCUACUCCuGCUcCGCuAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 131067 0.66 0.985223
Target:  5'- -uGGAcGcGGugGcGGCGAcCGCGGCu -3'
miRNA:   3'- agUCUaCuCCugCuCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 193313 0.66 0.985053
Target:  5'- -gGGGUGGugggcacGGugGGGGUGGUCGCc-- -3'
miRNA:   3'- agUCUACU-------CCugCUCCGCUAGCGucg -5'
14210 3' -54.4 NC_003521.1 + 97529 0.66 0.98418
Target:  5'- cUCGGGgu-GGuCGAGGCGcucgaacaugcgcggGUCGCAGg -3'
miRNA:   3'- -AGUCUacuCCuGCUCCGC---------------UAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 142181 0.66 0.98418
Target:  5'- -aAGAaGAGGACGAGGaggaaGAagaggaggagcgacgUgGCGGCa -3'
miRNA:   3'- agUCUaCUCCUGCUCCg----CU---------------AgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 98226 0.66 0.983454
Target:  5'- gCGGcGUGGGaGGCgggGAGGCGGggGCGGCc -3'
miRNA:   3'- aGUC-UACUC-CUG---CUCCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 6828 0.66 0.983454
Target:  5'- cCAGAccagGAGGGCgccGAGGaGGUUGUAGUg -3'
miRNA:   3'- aGUCUa---CUCCUG---CUCCgCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 51645 0.66 0.983454
Target:  5'- aUAGGaaGGGACGGGGUGGgggUUGCuGCg -3'
miRNA:   3'- aGUCUacUCCUGCUCCGCU---AGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 102964 0.66 0.983454
Target:  5'- cUCGGGcgucGGGGcucugGCGGGGCGGcccagcCGCGGCg -3'
miRNA:   3'- -AGUCUa---CUCC-----UGCUCCGCUa-----GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 17158 0.66 0.983454
Target:  5'- gCGGcgcGAGGcCGAGGCGcagCGCuGGCa -3'
miRNA:   3'- aGUCua-CUCCuGCUCCGCua-GCG-UCG- -5'
14210 3' -54.4 NC_003521.1 + 140151 0.66 0.983454
Target:  5'- -gAGAUGcAGGAggUGGGGUGGUucuugcgcuucUGCAGCu -3'
miRNA:   3'- agUCUAC-UCCU--GCUCCGCUA-----------GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 213523 0.66 0.983454
Target:  5'- gUCGG-UGAGGAUGgcGGGCaGcUCGgAGCa -3'
miRNA:   3'- -AGUCuACUCCUGC--UCCG-CuAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 36976 0.66 0.983268
Target:  5'- gCGGGUGcucGGcGGCGAcauccgcgacgagGGCG-UCGCGGCg -3'
miRNA:   3'- aGUCUAC---UC-CUGCU-------------CCGCuAGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.