miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14211 3' -55.1 NC_003521.1 + 156725 0.66 0.975652
Target:  5'- gAGCG-CAUGuUCGUgggcucggucuUUGCCGcCCCCa -3'
miRNA:   3'- aUCGCaGUACuAGCG-----------AGCGGUuGGGG- -5'
14211 3' -55.1 NC_003521.1 + 210826 0.66 0.975652
Target:  5'- cAGCGgucCGUGG-CGCUCGUCcccuCCCUc -3'
miRNA:   3'- aUCGCa--GUACUaGCGAGCGGuu--GGGG- -5'
14211 3' -55.1 NC_003521.1 + 164459 0.66 0.975652
Target:  5'- cGGcCGUCAcGGUCGC-CGCUGccGCCgCCg -3'
miRNA:   3'- aUC-GCAGUaCUAGCGaGCGGU--UGG-GG- -5'
14211 3' -55.1 NC_003521.1 + 130924 0.66 0.975652
Target:  5'- cGGCGUCGgcGGUCGaggUCGCaCGcaguuacuggugGCCCCg -3'
miRNA:   3'- aUCGCAGUa-CUAGCg--AGCG-GU------------UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 124833 0.66 0.975652
Target:  5'- cUAGCGUCAgcaGAuuuUCGCgCGCCAugGgUCCg -3'
miRNA:   3'- -AUCGCAGUa--CU---AGCGaGCGGU--UgGGG- -5'
14211 3' -55.1 NC_003521.1 + 81034 0.66 0.975652
Target:  5'- -cGCugGUCugguUGAUguugaCGCacugCGCCAACCCCa -3'
miRNA:   3'- auCG--CAGu---ACUA-----GCGa---GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 47085 0.66 0.975652
Target:  5'- -cGCGcaggaacuccuUCAUGGUgGC-CGCCAGCUCg -3'
miRNA:   3'- auCGC-----------AGUACUAgCGaGCGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 196187 0.66 0.973091
Target:  5'- -cGUG-CGUGGUCuuuuGCgaaUCGCCGACCCg -3'
miRNA:   3'- auCGCaGUACUAG----CG---AGCGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 165475 0.66 0.973091
Target:  5'- gAGCGUCAggUGGuagUCG-UCGCgGGCCgCCg -3'
miRNA:   3'- aUCGCAGU--ACU---AGCgAGCGgUUGG-GG- -5'
14211 3' -55.1 NC_003521.1 + 136225 0.66 0.973091
Target:  5'- cGGCGUCuacagcuaccucAUGA-CGCaCGCCGGCCgCu -3'
miRNA:   3'- aUCGCAG------------UACUaGCGaGCGGUUGGgG- -5'
14211 3' -55.1 NC_003521.1 + 181805 0.66 0.973091
Target:  5'- -uGCGUCAgggcggGGUCGUcuccguagccuUCGUCGuCCCCc -3'
miRNA:   3'- auCGCAGUa-----CUAGCG-----------AGCGGUuGGGG- -5'
14211 3' -55.1 NC_003521.1 + 68238 0.66 0.973091
Target:  5'- gAGCGguacguUCAccUGGcggUGCgacCGCCGACCCCg -3'
miRNA:   3'- aUCGC------AGU--ACUa--GCGa--GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 236674 0.66 0.973091
Target:  5'- gGGUGUCAUGGUCuCUaCGCgguuguggaaCGGCCUCg -3'
miRNA:   3'- aUCGCAGUACUAGcGA-GCG----------GUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 86524 0.66 0.973091
Target:  5'- -cGCGUCGgcccCGgaCGCCGugccGCCCCg -3'
miRNA:   3'- auCGCAGUacuaGCgaGCGGU----UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 77987 0.66 0.972825
Target:  5'- -cGcCGUUcugcacgAUGGUCGCgcagaGCCAGCCCUu -3'
miRNA:   3'- auC-GCAG-------UACUAGCGag---CGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 179889 0.66 0.972287
Target:  5'- gAGCGUCAUGAgaCGUggugaGCCcaccgucucgaacuGACCCUg -3'
miRNA:   3'- aUCGCAGUACUa-GCGag---CGG--------------UUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 239811 0.66 0.970626
Target:  5'- cGGCGUgAUGcgCGCguagaagccguacgGCCGGCCCa -3'
miRNA:   3'- aUCGCAgUACuaGCGag------------CGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 39584 0.66 0.970626
Target:  5'- cGGCGUgAUGcgCGCguagaagccguacgGCCGGCCCa -3'
miRNA:   3'- aUCGCAgUACuaGCGag------------CGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 233239 0.66 0.970342
Target:  5'- -uGCGUCAUGcuacGUCaCUCGUCAccguACCCa -3'
miRNA:   3'- auCGCAGUAC----UAGcGAGCGGU----UGGGg -5'
14211 3' -55.1 NC_003521.1 + 123231 0.66 0.970342
Target:  5'- cGGCGguagGUGGUCGUagCGCCGcGCCCa -3'
miRNA:   3'- aUCGCag--UACUAGCGa-GCGGU-UGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.