miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14228 5' -55.3 NC_003521.1 + 159894 0.66 0.977069
Target:  5'- aGCUcucacGUGCAguACGGGCagcucGGUGAGGAc-- -3'
miRNA:   3'- gCGG-----UACGU--UGUCCG-----CCACUCCUucc -5'
14228 5' -55.3 NC_003521.1 + 177384 0.66 0.976834
Target:  5'- aGUCGUGCAucuugcGCAGGUugaguccguGGUGcgcccaguuggacAGGAAGGc -3'
miRNA:   3'- gCGGUACGU------UGUCCG---------CCAC-------------UCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 124470 0.66 0.976358
Target:  5'- aGCUcgGCcucguCGGGCGGcuggucguagcgcgUGAGGAAGc -3'
miRNA:   3'- gCGGuaCGuu---GUCCGCC--------------ACUCCUUCc -5'
14228 5' -55.3 NC_003521.1 + 213628 0.66 0.97563
Target:  5'- uCGCCGcGCAGCAGGaUgaaacaccagagcagGGUGGGGAc-- -3'
miRNA:   3'- -GCGGUaCGUUGUCC-G---------------CCACUCCUucc -5'
14228 5' -55.3 NC_003521.1 + 235828 0.66 0.974635
Target:  5'- gCGUCA-GCGucugacGCGGGaUGGUGAGGAcaccacacGGGg -3'
miRNA:   3'- -GCGGUaCGU------UGUCC-GCCACUCCU--------UCC- -5'
14228 5' -55.3 NC_003521.1 + 135262 0.66 0.974635
Target:  5'- uGCUcUGCGAgUAGG-GGagGAGGGAGGa -3'
miRNA:   3'- gCGGuACGUU-GUCCgCCa-CUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 148015 0.66 0.974635
Target:  5'- uGuCCAUGC-ACAGGauaaaGAGGAAGGc -3'
miRNA:   3'- gC-GGUACGuUGUCCgcca-CUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 86884 0.66 0.974635
Target:  5'- -aCCAUgacggcGCGGCGGGUGGccGAGGAGuGGa -3'
miRNA:   3'- gcGGUA------CGUUGUCCGCCa-CUCCUU-CC- -5'
14228 5' -55.3 NC_003521.1 + 166809 0.66 0.974382
Target:  5'- cCGCCGcugcugcUGCGACgauccAGGCgacgacGGUGAGGAuacgcAGGc -3'
miRNA:   3'- -GCGGU-------ACGUUG-----UCCG------CCACUCCU-----UCC- -5'
14228 5' -55.3 NC_003521.1 + 135616 0.66 0.974127
Target:  5'- aCGCCGcGCAgcucGCGGGCGGaucccacgaucgGcGGggGGc -3'
miRNA:   3'- -GCGGUaCGU----UGUCCGCCa-----------CuCCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 150537 0.66 0.972018
Target:  5'- aGCCGUGgGGuCcGGCGGUGGuGGugcGGGu -3'
miRNA:   3'- gCGGUACgUU-GuCCGCCACU-CCu--UCC- -5'
14228 5' -55.3 NC_003521.1 + 102349 0.66 0.972018
Target:  5'- aCGCCGgggugGCGGCAGGCGcucuUGAaGAAGu -3'
miRNA:   3'- -GCGGUa----CGUUGUCCGCc---ACUcCUUCc -5'
14228 5' -55.3 NC_003521.1 + 105817 0.66 0.972018
Target:  5'- uGCCcgGCAGcCAGaUGGUGGGGcggaugauGAGGu -3'
miRNA:   3'- gCGGuaCGUU-GUCcGCCACUCC--------UUCC- -5'
14228 5' -55.3 NC_003521.1 + 176167 0.66 0.972018
Target:  5'- aGCCcgGUGGCAGGUGGUugauGAGcGAGu- -3'
miRNA:   3'- gCGGuaCGUUGUCCGCCA----CUC-CUUcc -5'
14228 5' -55.3 NC_003521.1 + 91942 0.66 0.972018
Target:  5'- gGaCCcgGCGGCGgaccccguGGCGGcGAGGgcGGa -3'
miRNA:   3'- gC-GGuaCGUUGU--------CCGCCaCUCCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 46048 0.66 0.971746
Target:  5'- gCGCCAUgacguugGCAcCGGGCGGgaUGAGGucGc -3'
miRNA:   3'- -GCGGUA-------CGUuGUCCGCC--ACUCCuuCc -5'
14228 5' -55.3 NC_003521.1 + 146960 0.66 0.969212
Target:  5'- aGCCAUccGCGucagaGGGCGG-GAGGAAc- -3'
miRNA:   3'- gCGGUA--CGUug---UCCGCCaCUCCUUcc -5'
14228 5' -55.3 NC_003521.1 + 48924 0.66 0.969212
Target:  5'- gCGCCGacuauCAGC-GGCGGgGAGGGAGa -3'
miRNA:   3'- -GCGGUac---GUUGuCCGCCaCUCCUUCc -5'
14228 5' -55.3 NC_003521.1 + 148519 0.66 0.969212
Target:  5'- -----cGgGACGGG-GGUGGGGGAGGg -3'
miRNA:   3'- gcgguaCgUUGUCCgCCACUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 83299 0.66 0.969212
Target:  5'- gGCCAuguccacauugUGCGACAGGgGGUaGcGGucGGu -3'
miRNA:   3'- gCGGU-----------ACGUUGUCCgCCA-CuCCuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.