miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14233 5' -52.1 NC_003521.1 + 105654 0.66 0.997837
Target:  5'- gCCCAGCUCgggggugggCGGCACGAucaguuGCCCGAu- -3'
miRNA:   3'- gGGGUUGGG---------GUUGUGUUu-----UGGGCUcu -5'
14233 5' -52.1 NC_003521.1 + 54079 0.66 0.997837
Target:  5'- gCCgAGCCCCAGCAUggGcucGCCUa--- -3'
miRNA:   3'- gGGgUUGGGGUUGUGuuU---UGGGcucu -5'
14233 5' -52.1 NC_003521.1 + 53057 0.66 0.997837
Target:  5'- gCCCAGCUCCucGCGCAGGGgCgCGAa- -3'
miRNA:   3'- gGGGUUGGGGu-UGUGUUUUgG-GCUcu -5'
14233 5' -52.1 NC_003521.1 + 57818 0.66 0.997837
Target:  5'- gCCCAGCUgCcGCAUGAAGCUCGGc- -3'
miRNA:   3'- gGGGUUGGgGuUGUGUUUUGGGCUcu -5'
14233 5' -52.1 NC_003521.1 + 149616 0.66 0.997837
Target:  5'- uCCCCGuacuguGCCCaCGACGC---GCCCGcGGu -3'
miRNA:   3'- -GGGGU------UGGG-GUUGUGuuuUGGGCuCU- -5'
14233 5' -52.1 NC_003521.1 + 43944 0.66 0.997837
Target:  5'- gCCCCGGCCUCAccCGCGGugccguuGCUgGAGGu -3'
miRNA:   3'- -GGGGUUGGGGUu-GUGUUu------UGGgCUCU- -5'
14233 5' -52.1 NC_003521.1 + 104215 0.66 0.997837
Target:  5'- gUCUCGGCCuCCucGCACGAgaGugCCGAGu -3'
miRNA:   3'- -GGGGUUGG-GGu-UGUGUU--UugGGCUCu -5'
14233 5' -52.1 NC_003521.1 + 126991 0.66 0.997837
Target:  5'- gCCCCGcugccgcuGCCCgaCGugGCGGuGCCCGAcGAc -3'
miRNA:   3'- -GGGGU--------UGGG--GUugUGUUuUGGGCU-CU- -5'
14233 5' -52.1 NC_003521.1 + 90141 0.66 0.997837
Target:  5'- aUCCCAGCCCCGgauACugAuacGCCCc--- -3'
miRNA:   3'- -GGGGUUGGGGU---UGugUuu-UGGGcucu -5'
14233 5' -52.1 NC_003521.1 + 116592 0.66 0.997837
Target:  5'- aCCCAACCCUucggaAUcgGGCCCGGu- -3'
miRNA:   3'- gGGGUUGGGGuug--UGuuUUGGGCUcu -5'
14233 5' -52.1 NC_003521.1 + 111917 0.66 0.997837
Target:  5'- cCCUCAACCgcauCCAGCGCAGcaacauCCUGcAGAg -3'
miRNA:   3'- -GGGGUUGG----GGUUGUGUUuu----GGGC-UCU- -5'
14233 5' -52.1 NC_003521.1 + 99979 0.66 0.997837
Target:  5'- aCCgCGaagcGCUCCAGCACGucgugacggAAGgCCGAGAa -3'
miRNA:   3'- -GGgGU----UGGGGUUGUGU---------UUUgGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 113496 0.66 0.997837
Target:  5'- gCCUGGCCCuCAugGCcgucaCCGAGAg -3'
miRNA:   3'- gGGGUUGGG-GUugUGuuuugGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 218884 0.66 0.997837
Target:  5'- gCCCAcuaGCUCCAGCcCGAGgccGCCCGccAGGg -3'
miRNA:   3'- gGGGU---UGGGGUUGuGUUU---UGGGC--UCU- -5'
14233 5' -52.1 NC_003521.1 + 207595 0.66 0.997837
Target:  5'- gCUCAACgCCGGCuGCAAGAUCCGucuGGg -3'
miRNA:   3'- gGGGUUGgGGUUG-UGUUUUGGGCu--CU- -5'
14233 5' -52.1 NC_003521.1 + 64357 0.66 0.997837
Target:  5'- gCCCUGggcGCCCUgGACAU---GCCCGAGGu -3'
miRNA:   3'- -GGGGU---UGGGG-UUGUGuuuUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 217727 0.66 0.997801
Target:  5'- gUCCCGGCCCCccgcccggccacgGACGCAgacaccacAGACgCGGGu -3'
miRNA:   3'- -GGGGUUGGGG-------------UUGUGU--------UUUGgGCUCu -5'
14233 5' -52.1 NC_003521.1 + 190671 0.66 0.997446
Target:  5'- aCUCCuGCCCCGAUuACuacGCCgGGGAg -3'
miRNA:   3'- -GGGGuUGGGGUUG-UGuuuUGGgCUCU- -5'
14233 5' -52.1 NC_003521.1 + 186483 0.66 0.997446
Target:  5'- gCCCCGAguggCCCAGgGCgAGAGCCCcgucGGGAu -3'
miRNA:   3'- -GGGGUUg---GGGUUgUG-UUUUGGG----CUCU- -5'
14233 5' -52.1 NC_003521.1 + 206551 0.66 0.997446
Target:  5'- gCCCGcCCCCGugACAGGACgauagggcgaCGGGGc -3'
miRNA:   3'- gGGGUuGGGGUugUGUUUUGg---------GCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.