miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 5' -68.1 NC_003521.1 + 154379 0.66 0.554297
Target:  5'- gUCGCGUCCuCGGUCGCcGCU-GCCGc -3'
miRNA:   3'- uGGCGCGGGcGCCAGCG-CGGcCGGCc -5'
14239 5' -68.1 NC_003521.1 + 155925 0.66 0.554297
Target:  5'- gACCGgGCgCUGaCGGccuacUCGCGCCacccGGaCCGGg -3'
miRNA:   3'- -UGGCgCG-GGC-GCC-----AGCGCGG----CC-GGCC- -5'
14239 5' -68.1 NC_003521.1 + 200336 0.66 0.554297
Target:  5'- cGCUGCgGCgCCGUGG-CGCGCCG--CGGa -3'
miRNA:   3'- -UGGCG-CG-GGCGCCaGCGCGGCcgGCC- -5'
14239 5' -68.1 NC_003521.1 + 71742 0.66 0.554297
Target:  5'- cACCGCaCCauCGUGGUCGUGCC-GCagaaGGg -3'
miRNA:   3'- -UGGCGcGG--GCGCCAGCGCGGcCGg---CC- -5'
14239 5' -68.1 NC_003521.1 + 130206 0.66 0.554297
Target:  5'- uGCCGaUGCCCGCGGUacagaUGCaGCCGcCCu- -3'
miRNA:   3'- -UGGC-GCGGGCGCCA-----GCG-CGGCcGGcc -5'
14239 5' -68.1 NC_003521.1 + 33444 0.66 0.554297
Target:  5'- aGCUGCugggGCUCGCGcuguucucgguGUCG-GCCGGCCGc -3'
miRNA:   3'- -UGGCG----CGGGCGC-----------CAGCgCGGCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 5813 0.66 0.554297
Target:  5'- cCCGCGUCCGCGGagGCcagggggaccGCUaccGCUGGg -3'
miRNA:   3'- uGGCGCGGGCGCCagCG----------CGGc--CGGCC- -5'
14239 5' -68.1 NC_003521.1 + 16251 0.66 0.554297
Target:  5'- uACCucaGCCUGCGGcUGCGCUGccGCUGGu -3'
miRNA:   3'- -UGGcg-CGGGCGCCaGCGCGGC--CGGCC- -5'
14239 5' -68.1 NC_003521.1 + 29909 0.66 0.554297
Target:  5'- gACCGaCGaCCCGUGGcCGUcaaggGCCuGGCaCGGc -3'
miRNA:   3'- -UGGC-GC-GGGCGCCaGCG-----CGG-CCG-GCC- -5'
14239 5' -68.1 NC_003521.1 + 61866 0.66 0.554297
Target:  5'- cGCCGCGuCuuGUGGUCGCaGCUGacGCUccaGGa -3'
miRNA:   3'- -UGGCGC-GggCGCCAGCG-CGGC--CGG---CC- -5'
14239 5' -68.1 NC_003521.1 + 224021 0.66 0.554297
Target:  5'- -gCGgGCCCgGCGGUCGgGgCGGgCGc -3'
miRNA:   3'- ugGCgCGGG-CGCCAGCgCgGCCgGCc -5'
14239 5' -68.1 NC_003521.1 + 164310 0.66 0.554297
Target:  5'- gGCCcugGUGUCgCGCGGUCcCGCUcuGGCCGa -3'
miRNA:   3'- -UGG---CGCGG-GCGCCAGcGCGG--CCGGCc -5'
14239 5' -68.1 NC_003521.1 + 35463 0.66 0.554297
Target:  5'- uGCCGCGCa---GGUCGUGCaCGGCg-- -3'
miRNA:   3'- -UGGCGCGggcgCCAGCGCG-GCCGgcc -5'
14239 5' -68.1 NC_003521.1 + 233396 0.66 0.552525
Target:  5'- cGCCGCGUCCGUgauggaacacaggGGcaucguUUGCGUggguuugUGGCCGGg -3'
miRNA:   3'- -UGGCGCGGGCG-------------CC------AGCGCG-------GCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 129851 0.66 0.551639
Target:  5'- gGCCGUGCCCugcuacugcgacgaGUGG--GUGaCGGCCGGg -3'
miRNA:   3'- -UGGCGCGGG--------------CGCCagCGCgGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 201376 0.66 0.545453
Target:  5'- -aCGCgGCCCuCGGcgcCGgGCuCGGCCGGc -3'
miRNA:   3'- ugGCG-CGGGcGCCa--GCgCG-GCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 185692 0.66 0.545453
Target:  5'- uCCGCGCCgCGaccuuauuugaGGUcCGCGUCucGCCGGg -3'
miRNA:   3'- uGGCGCGG-GCg----------CCA-GCGCGGc-CGGCC- -5'
14239 5' -68.1 NC_003521.1 + 100971 0.66 0.545453
Target:  5'- cGCCGUGCCCGg---CGCGCaCGGCg-- -3'
miRNA:   3'- -UGGCGCGGGCgccaGCGCG-GCCGgcc -5'
14239 5' -68.1 NC_003521.1 + 41099 0.66 0.545453
Target:  5'- gACCGCucaaCGCGGUgGUGCUGGUCa- -3'
miRNA:   3'- -UGGCGcgg-GCGCCAgCGCGGCCGGcc -5'
14239 5' -68.1 NC_003521.1 + 110646 0.66 0.545453
Target:  5'- cGCCGgGCgCCGgcaCGGUCacgGC-CCGGUCGGc -3'
miRNA:   3'- -UGGCgCG-GGC---GCCAG---CGcGGCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.