miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14249 5' -46.7 NC_003521.1 + 61544 0.66 0.999998
Target:  5'- uCGCAgGAUcAACGUaACGGAgguAACGCUg -3'
miRNA:   3'- -GCGUaCUGuUUGCAcUGCUU---UUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 48991 0.66 0.999998
Target:  5'- gCGC-UGAgGAACGUGcuGCG-GGACGCc -3'
miRNA:   3'- -GCGuACUgUUUGCAC--UGCuUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 22465 0.66 0.999998
Target:  5'- uCGCuUGGCGAGCGggUGGCGcuauCGCa -3'
miRNA:   3'- -GCGuACUGUUUGC--ACUGCuuuuGCGa -5'
14249 5' -46.7 NC_003521.1 + 163465 0.66 0.999998
Target:  5'- gCGCAUGACugaggaugaugAGACcgggGGCGAAAGCGa- -3'
miRNA:   3'- -GCGUACUG-----------UUUGca--CUGCUUUUGCga -5'
14249 5' -46.7 NC_003521.1 + 157042 0.66 0.999998
Target:  5'- gCGCGgucgGAgGAGCGcGGCGggGgGCGCc -3'
miRNA:   3'- -GCGUa---CUgUUUGCaCUGCuuU-UGCGa -5'
14249 5' -46.7 NC_003521.1 + 94251 0.66 0.999997
Target:  5'- uGC-UGAgAAGCGUgcuuuuuuuuuuGACuGAGAACGCUg -3'
miRNA:   3'- gCGuACUgUUUGCA------------CUG-CUUUUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 74808 0.66 0.999997
Target:  5'- gGCGaGACGcgGACG-GACGGcgccGAGCGCg -3'
miRNA:   3'- gCGUaCUGU--UUGCaCUGCU----UUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 168910 0.66 0.999997
Target:  5'- cCGUAggGGUAGACGUGAUgcgagGAGGGCGCa -3'
miRNA:   3'- -GCGUa-CUGUUUGCACUG-----CUUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 77231 0.66 0.999997
Target:  5'- aGCGUGACGcuguaGACGUcGGCGggGuccACGg- -3'
miRNA:   3'- gCGUACUGU-----UUGCA-CUGCuuU---UGCga -5'
14249 5' -46.7 NC_003521.1 + 8700 0.66 0.999997
Target:  5'- uCGCAgggaaacgcGACGAuuguuuaauaccGCGUGuaACGggGACGCg -3'
miRNA:   3'- -GCGUa--------CUGUU------------UGCAC--UGCuuUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 123561 0.66 0.999997
Target:  5'- gGCc-GACGAcgGCgGUGGCGGGAugGCg -3'
miRNA:   3'- gCGuaCUGUU--UG-CACUGCUUUugCGa -5'
14249 5' -46.7 NC_003521.1 + 116347 0.66 0.999997
Target:  5'- aCGCGgacgGACcgcGAGCGcGGCGGcGAACGCg -3'
miRNA:   3'- -GCGUa---CUG---UUUGCaCUGCU-UUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 31006 0.66 0.999996
Target:  5'- gGC--GACGAcgGCGccGGCGAGGACGCg -3'
miRNA:   3'- gCGuaCUGUU--UGCa-CUGCUUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 78093 0.66 0.999996
Target:  5'- gCGCAcGuCGAACGaGugGuuGACGCUc -3'
miRNA:   3'- -GCGUaCuGUUUGCaCugCuuUUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 144060 0.66 0.999996
Target:  5'- uGCAUGGcCGAGC-UGGCG---GCGCUg -3'
miRNA:   3'- gCGUACU-GUUUGcACUGCuuuUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 132393 0.66 0.999996
Target:  5'- aUGCA-GACAGACGgGGCGGggucccugcAAugGCa -3'
miRNA:   3'- -GCGUaCUGUUUGCaCUGCU---------UUugCGa -5'
14249 5' -46.7 NC_003521.1 + 168500 0.66 0.999996
Target:  5'- gGCGaGACGgaGGCGgagGACGgcGACGCc -3'
miRNA:   3'- gCGUaCUGU--UUGCa--CUGCuuUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 236918 0.66 0.999996
Target:  5'- aCGCcUGAagaaaGAGCGUGccGCGAGccuacGGCGCUa -3'
miRNA:   3'- -GCGuACUg----UUUGCAC--UGCUU-----UUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 123851 0.66 0.999996
Target:  5'- gCGCAgcuugGGCAGGCGcucGCGAauguaGAGCGCg -3'
miRNA:   3'- -GCGUa----CUGUUUGCac-UGCU-----UUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 186927 0.66 0.999996
Target:  5'- uGCAgGACGAgcGCGUGACugucguuGCGCa -3'
miRNA:   3'- gCGUaCUGUU--UGCACUGcuuu---UGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.