miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 185244 0.66 0.886899
Target:  5'- aGACGGUGugGuCGcuguGUCCGCucaacCGCGa -3'
miRNA:   3'- gCUGCCGCugCuGC----CAGGCGca---GCGC- -5'
14266 5' -60.5 NC_003521.1 + 60822 0.66 0.886899
Target:  5'- uCGACGaggaugccaCGACGGCGGcCCGCGagaGCa -3'
miRNA:   3'- -GCUGCc--------GCUGCUGCCaGGCGCag-CGc -5'
14266 5' -60.5 NC_003521.1 + 235133 0.66 0.886899
Target:  5'- uGACGGCGcccguuccccGCgGACGGgcgcCCGUGUCuCGa -3'
miRNA:   3'- gCUGCCGC----------UG-CUGCCa---GGCGCAGcGC- -5'
14266 5' -60.5 NC_003521.1 + 103470 0.66 0.886899
Target:  5'- aCGGCGuaGGCGACGaaCUGCGgcaCGCGc -3'
miRNA:   3'- -GCUGCcgCUGCUGCcaGGCGCa--GCGC- -5'
14266 5' -60.5 NC_003521.1 + 68423 0.66 0.886899
Target:  5'- -cGCGGCGACGGC--UCCGCcggCGCc -3'
miRNA:   3'- gcUGCCGCUGCUGccAGGCGca-GCGc -5'
14266 5' -60.5 NC_003521.1 + 188444 0.66 0.886899
Target:  5'- aGGCcGCGACGGCGGUCagGaUGaCGCGc -3'
miRNA:   3'- gCUGcCGCUGCUGCCAGg-C-GCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 49297 0.66 0.886899
Target:  5'- cCGACuuGGCGAa---GGUCCGCGgaccuacCGCGu -3'
miRNA:   3'- -GCUG--CCGCUgcugCCAGGCGCa------GCGC- -5'
14266 5' -60.5 NC_003521.1 + 132728 0.66 0.886899
Target:  5'- ---aGGCGACGAaGuGUCCGCGagcaCGCa -3'
miRNA:   3'- gcugCCGCUGCUgC-CAGGCGCa---GCGc -5'
14266 5' -60.5 NC_003521.1 + 34708 0.66 0.886899
Target:  5'- ---aGGCGAaGACGGcgCCGUG-CGCGu -3'
miRNA:   3'- gcugCCGCUgCUGCCa-GGCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 223110 0.66 0.886899
Target:  5'- -uGCGG-GAUGGCGG-CCGUcUCGCGc -3'
miRNA:   3'- gcUGCCgCUGCUGCCaGGCGcAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 167957 0.66 0.886268
Target:  5'- -uGCGGUGACGACGaccgCCGUgccuaccGUCGCc -3'
miRNA:   3'- gcUGCCGCUGCUGCca--GGCG-------CAGCGc -5'
14266 5' -60.5 NC_003521.1 + 44019 0.66 0.885002
Target:  5'- --cCGGCGACGucgaugacugcuACGGUcccguuuaccgcgcCCGCgGUCGCGc -3'
miRNA:   3'- gcuGCCGCUGC------------UGCCA--------------GGCG-CAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 118590 0.66 0.880509
Target:  5'- uGGCGGCGcucaguCGcCGGcacCCGCGcUCGCa -3'
miRNA:   3'- gCUGCCGCu-----GCuGCCa--GGCGC-AGCGc -5'
14266 5' -60.5 NC_003521.1 + 237993 0.66 0.880509
Target:  5'- uCGuCGGCGAuCGGuCGG-CUGgGUCGCc -3'
miRNA:   3'- -GCuGCCGCU-GCU-GCCaGGCgCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 229081 0.66 0.880509
Target:  5'- aGGCGGCGugGAUGG-CCaaacCGUgGUa -3'
miRNA:   3'- gCUGCCGCugCUGCCaGGc---GCAgCGc -5'
14266 5' -60.5 NC_003521.1 + 59288 0.66 0.880509
Target:  5'- -aGCGGUcGCGGCGGcCCGCuagucuUCGCGc -3'
miRNA:   3'- gcUGCCGcUGCUGCCaGGCGc-----AGCGC- -5'
14266 5' -60.5 NC_003521.1 + 31305 0.66 0.880509
Target:  5'- gCGGCaGCGGCGACGGUcaCCGUGa---- -3'
miRNA:   3'- -GCUGcCGCUGCUGCCA--GGCGCagcgc -5'
14266 5' -60.5 NC_003521.1 + 154297 0.66 0.880509
Target:  5'- gGGCGGC-ACGGC-GUCCGgGgccgaCGCGg -3'
miRNA:   3'- gCUGCCGcUGCUGcCAGGCgCa----GCGC- -5'
14266 5' -60.5 NC_003521.1 + 168257 0.66 0.880509
Target:  5'- gCGAUGGCGACGcugagaGGUCgCGagacgacgacacCGUCGCc -3'
miRNA:   3'- -GCUGCCGCUGCug----CCAG-GC------------GCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 120545 0.66 0.880509
Target:  5'- uCGGCGGC--CGGCGGUCC-CGggggagCGCc -3'
miRNA:   3'- -GCUGCCGcuGCUGCCAGGcGCa-----GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.