Results 1 - 20 of 286 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 60822 | 0.66 | 0.886899 |
Target: 5'- uCGACGaggaugccaCGACGGCGGcCCGCGagaGCa -3' miRNA: 3'- -GCUGCc--------GCUGCUGCCaGGCGCag-CGc -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 34708 | 0.66 | 0.886899 |
Target: 5'- ---aGGCGAaGACGGcgCCGUG-CGCGu -3' miRNA: 3'- gcugCCGCUgCUGCCa-GGCGCaGCGC- -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 132728 | 0.66 | 0.886899 |
Target: 5'- ---aGGCGACGAaGuGUCCGCGagcaCGCa -3' miRNA: 3'- gcugCCGCUGCUgC-CAGGCGCa---GCGc -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 49297 | 0.66 | 0.886899 |
Target: 5'- cCGACuuGGCGAa---GGUCCGCGgaccuacCGCGu -3' miRNA: 3'- -GCUG--CCGCUgcugCCAGGCGCa------GCGC- -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 103470 | 0.66 | 0.886899 |
Target: 5'- aCGGCGuaGGCGACGaaCUGCGgcaCGCGc -3' miRNA: 3'- -GCUGCcgCUGCUGCcaGGCGCa--GCGC- -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 68423 | 0.66 | 0.886899 |
Target: 5'- -cGCGGCGACGGC--UCCGCcggCGCc -3' miRNA: 3'- gcUGCCGCUGCUGccAGGCGca-GCGc -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 188444 | 0.66 | 0.886899 |
Target: 5'- aGGCcGCGACGGCGGUCagGaUGaCGCGc -3' miRNA: 3'- gCUGcCGCUGCUGCCAGg-C-GCaGCGC- -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 223110 | 0.66 | 0.886899 |
Target: 5'- -uGCGG-GAUGGCGG-CCGUcUCGCGc -3' miRNA: 3'- gcUGCCgCUGCUGCCaGGCGcAGCGC- -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 185244 | 0.66 | 0.886899 |
Target: 5'- aGACGGUGugGuCGcuguGUCCGCucaacCGCGa -3' miRNA: 3'- gCUGCCGCugCuGC----CAGGCGca---GCGC- -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 235133 | 0.66 | 0.886899 |
Target: 5'- uGACGGCGcccguuccccGCgGACGGgcgcCCGUGUCuCGa -3' miRNA: 3'- gCUGCCGC----------UG-CUGCCa---GGCGCAGcGC- -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 167957 | 0.66 | 0.886268 |
Target: 5'- -uGCGGUGACGACGaccgCCGUgccuaccGUCGCc -3' miRNA: 3'- gcUGCCGCUGCUGCca--GGCG-------CAGCGc -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 44019 | 0.66 | 0.885002 |
Target: 5'- --cCGGCGACGucgaugacugcuACGGUcccguuuaccgcgcCCGCgGUCGCGc -3' miRNA: 3'- gcuGCCGCUGC------------UGCCA--------------GGCG-CAGCGC- -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 157281 | 0.66 | 0.880509 |
Target: 5'- cCGG-GGCaACGGCGG-CCGCGUaCGgGg -3' miRNA: 3'- -GCUgCCGcUGCUGCCaGGCGCA-GCgC- -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 237993 | 0.66 | 0.880509 |
Target: 5'- uCGuCGGCGAuCGGuCGG-CUGgGUCGCc -3' miRNA: 3'- -GCuGCCGCU-GCU-GCCaGGCgCAGCGc -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 59288 | 0.66 | 0.880509 |
Target: 5'- -aGCGGUcGCGGCGGcCCGCuagucuUCGCGc -3' miRNA: 3'- gcUGCCGcUGCUGCCaGGCGc-----AGCGC- -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 31305 | 0.66 | 0.880509 |
Target: 5'- gCGGCaGCGGCGACGGUcaCCGUGa---- -3' miRNA: 3'- -GCUGcCGCUGCUGCCA--GGCGCagcgc -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 118590 | 0.66 | 0.880509 |
Target: 5'- uGGCGGCGcucaguCGcCGGcacCCGCGcUCGCa -3' miRNA: 3'- gCUGCCGCu-----GCuGCCa--GGCGC-AGCGc -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 120545 | 0.66 | 0.880509 |
Target: 5'- uCGGCGGC--CGGCGGUCC-CGggggagCGCc -3' miRNA: 3'- -GCUGCCGcuGCUGCCAGGcGCa-----GCGc -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 168257 | 0.66 | 0.880509 |
Target: 5'- gCGAUGGCGACGcugagaGGUCgCGagacgacgacacCGUCGCc -3' miRNA: 3'- -GCUGCCGCUGCug----CCAG-GC------------GCAGCGc -5' |
|||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 154297 | 0.66 | 0.880509 |
Target: 5'- gGGCGGC-ACGGC-GUCCGgGgccgaCGCGg -3' miRNA: 3'- gCUGCCGcUGCUGcCAGGCgCa----GCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home