Results 1 - 20 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14272 | 3' | -63.5 | NC_003521.1 | + | 164766 | 0.65 | 0.735863 |
Target: 5'- cGCCGGgcgaaccauagugaCGCGGCGGgCaCGGGuCgUCGGGGa -3' miRNA: 3'- -CGGCC--------------GCGCCGCCgG-GUCU-G-AGCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 112435 | 0.66 | 0.729558 |
Target: 5'- cGCCcGCucaGGCGGCCCAGGCggcccuggUGGGc -3' miRNA: 3'- -CGGcCGcg-CCGCCGGGUCUGa-------GCUCu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 111949 | 0.66 | 0.729558 |
Target: 5'- cCUGGCGCGGCGGCa-GGA--UGAGu -3' miRNA: 3'- cGGCCGCGCCGCCGggUCUgaGCUCu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 94481 | 0.66 | 0.729558 |
Target: 5'- -aCGGCGCGGUGauGCCUccGGA-UCGGGGa -3' miRNA: 3'- cgGCCGCGCCGC--CGGG--UCUgAGCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 153076 | 0.66 | 0.729558 |
Target: 5'- cGCC-GC-CGG-GGCCCGGGC-CGGGGc -3' miRNA: 3'- -CGGcCGcGCCgCCGGGUCUGaGCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 6169 | 0.66 | 0.729558 |
Target: 5'- cCUGGCGgGGCcaGGCgCAGAa-CGAGAc -3' miRNA: 3'- cGGCCGCgCCG--CCGgGUCUgaGCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 218716 | 0.66 | 0.729558 |
Target: 5'- cGgCGGCgGCGGCGGgCgAGAagcggcgUCGGGAc -3' miRNA: 3'- -CgGCCG-CGCCGCCgGgUCUg------AGCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 166323 | 0.66 | 0.729558 |
Target: 5'- aGCagGGCGUugaaguagaagGGCGGCaCCAG-CUCGAa- -3' miRNA: 3'- -CGg-CCGCG-----------CCGCCG-GGUCuGAGCUcu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 127259 | 0.66 | 0.729558 |
Target: 5'- nGUCGGCGUccauGGC-GCCCAGGCgCGGc- -3' miRNA: 3'- -CGGCCGCG----CCGcCGGGUCUGaGCUcu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 155613 | 0.66 | 0.729558 |
Target: 5'- uCCGGCGCGGCG-CCgggugacgCAGugUCGu-- -3' miRNA: 3'- cGGCCGCGCCGCcGG--------GUCugAGCucu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 76871 | 0.66 | 0.729558 |
Target: 5'- uUCGGCGUccGCGGCCgAGACUCc--- -3' miRNA: 3'- cGGCCGCGc-CGCCGGgUCUGAGcucu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 71394 | 0.66 | 0.728654 |
Target: 5'- cGCCGucguccgcgugaGCgagGCGGCGGCCCcgaaccugacagaGGACgaggCGGGGa -3' miRNA: 3'- -CGGC------------CG---CGCCGCCGGG-------------UCUGa---GCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 216206 | 0.66 | 0.726845 |
Target: 5'- aCCGGCGCGG-GGUCCuccuggcacacgcAGACgaggccuacgagCGGGAg -3' miRNA: 3'- cGGCCGCGCCgCCGGG-------------UCUGa-----------GCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 118918 | 0.66 | 0.720491 |
Target: 5'- cGUCGGCGCcGCGGCgUGGGCggCGGc- -3' miRNA: 3'- -CGGCCGCGcCGCCGgGUCUGa-GCUcu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 195195 | 0.66 | 0.720491 |
Target: 5'- aGCCGGCgGCGGUGGCCgucuGCgUCGGc- -3' miRNA: 3'- -CGGCCG-CGCCGCCGGguc-UG-AGCUcu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 144176 | 0.66 | 0.720491 |
Target: 5'- cGCCGGCGCcGCcuGCCgCGcGCUgGAGAa -3' miRNA: 3'- -CGGCCGCGcCGc-CGG-GUcUGAgCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 12137 | 0.66 | 0.720491 |
Target: 5'- uCgGGUGCGGCGGCCUuaauaaAGugUgGAu- -3' miRNA: 3'- cGgCCGCGCCGCCGGG------UCugAgCUcu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 78543 | 0.66 | 0.720491 |
Target: 5'- cCCGGCGUGaCGGUgCAGagGCUgGGGAg -3' miRNA: 3'- cGGCCGCGCcGCCGgGUC--UGAgCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 55767 | 0.66 | 0.720491 |
Target: 5'- gGCgCGGC-CGGCGGUaCAG-CUCGaAGAu -3' miRNA: 3'- -CG-GCCGcGCCGCCGgGUCuGAGC-UCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 120932 | 0.66 | 0.720491 |
Target: 5'- uGCCcGCgGCGGCGGCuCCGG---CGAGGg -3' miRNA: 3'- -CGGcCG-CGCCGCCG-GGUCugaGCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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