miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 164766 0.65 0.735863
Target:  5'- cGCCGGgcgaaccauagugaCGCGGCGGgCaCGGGuCgUCGGGGa -3'
miRNA:   3'- -CGGCC--------------GCGCCGCCgG-GUCU-G-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 112435 0.66 0.729558
Target:  5'- cGCCcGCucaGGCGGCCCAGGCggcccuggUGGGc -3'
miRNA:   3'- -CGGcCGcg-CCGCCGGGUCUGa-------GCUCu -5'
14272 3' -63.5 NC_003521.1 + 111949 0.66 0.729558
Target:  5'- cCUGGCGCGGCGGCa-GGA--UGAGu -3'
miRNA:   3'- cGGCCGCGCCGCCGggUCUgaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 94481 0.66 0.729558
Target:  5'- -aCGGCGCGGUGauGCCUccGGA-UCGGGGa -3'
miRNA:   3'- cgGCCGCGCCGC--CGGG--UCUgAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 153076 0.66 0.729558
Target:  5'- cGCC-GC-CGG-GGCCCGGGC-CGGGGc -3'
miRNA:   3'- -CGGcCGcGCCgCCGGGUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 6169 0.66 0.729558
Target:  5'- cCUGGCGgGGCcaGGCgCAGAa-CGAGAc -3'
miRNA:   3'- cGGCCGCgCCG--CCGgGUCUgaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 218716 0.66 0.729558
Target:  5'- cGgCGGCgGCGGCGGgCgAGAagcggcgUCGGGAc -3'
miRNA:   3'- -CgGCCG-CGCCGCCgGgUCUg------AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 166323 0.66 0.729558
Target:  5'- aGCagGGCGUugaaguagaagGGCGGCaCCAG-CUCGAa- -3'
miRNA:   3'- -CGg-CCGCG-----------CCGCCG-GGUCuGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 127259 0.66 0.729558
Target:  5'- nGUCGGCGUccauGGC-GCCCAGGCgCGGc- -3'
miRNA:   3'- -CGGCCGCG----CCGcCGGGUCUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 155613 0.66 0.729558
Target:  5'- uCCGGCGCGGCG-CCgggugacgCAGugUCGu-- -3'
miRNA:   3'- cGGCCGCGCCGCcGG--------GUCugAGCucu -5'
14272 3' -63.5 NC_003521.1 + 76871 0.66 0.729558
Target:  5'- uUCGGCGUccGCGGCCgAGACUCc--- -3'
miRNA:   3'- cGGCCGCGc-CGCCGGgUCUGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 71394 0.66 0.728654
Target:  5'- cGCCGucguccgcgugaGCgagGCGGCGGCCCcgaaccugacagaGGACgaggCGGGGa -3'
miRNA:   3'- -CGGC------------CG---CGCCGCCGGG-------------UCUGa---GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 216206 0.66 0.726845
Target:  5'- aCCGGCGCGG-GGUCCuccuggcacacgcAGACgaggccuacgagCGGGAg -3'
miRNA:   3'- cGGCCGCGCCgCCGGG-------------UCUGa-----------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 118918 0.66 0.720491
Target:  5'- cGUCGGCGCcGCGGCgUGGGCggCGGc- -3'
miRNA:   3'- -CGGCCGCGcCGCCGgGUCUGa-GCUcu -5'
14272 3' -63.5 NC_003521.1 + 195195 0.66 0.720491
Target:  5'- aGCCGGCgGCGGUGGCCgucuGCgUCGGc- -3'
miRNA:   3'- -CGGCCG-CGCCGCCGGguc-UG-AGCUcu -5'
14272 3' -63.5 NC_003521.1 + 144176 0.66 0.720491
Target:  5'- cGCCGGCGCcGCcuGCCgCGcGCUgGAGAa -3'
miRNA:   3'- -CGGCCGCGcCGc-CGG-GUcUGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 12137 0.66 0.720491
Target:  5'- uCgGGUGCGGCGGCCUuaauaaAGugUgGAu- -3'
miRNA:   3'- cGgCCGCGCCGCCGGG------UCugAgCUcu -5'
14272 3' -63.5 NC_003521.1 + 78543 0.66 0.720491
Target:  5'- cCCGGCGUGaCGGUgCAGagGCUgGGGAg -3'
miRNA:   3'- cGGCCGCGCcGCCGgGUC--UGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 55767 0.66 0.720491
Target:  5'- gGCgCGGC-CGGCGGUaCAG-CUCGaAGAu -3'
miRNA:   3'- -CG-GCCGcGCCGCCGgGUCuGAGC-UCU- -5'
14272 3' -63.5 NC_003521.1 + 120932 0.66 0.720491
Target:  5'- uGCCcGCgGCGGCGGCuCCGG---CGAGGg -3'
miRNA:   3'- -CGGcCG-CGCCGCCG-GGUCugaGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.