Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14280 | 5' | -53.9 | NC_003521.1 | + | 57244 | 0.66 | 0.986928 |
Target: 5'- -gCACGCAGCCCGuuuugugUAUGGUgUGg -3' miRNA: 3'- ugGUGCGUCGGGCuguu---GUACUAgAC- -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 228990 | 0.66 | 0.986928 |
Target: 5'- gGCgGCGCAGgaCCGGCAGCAcgGAgCUa -3' miRNA: 3'- -UGgUGCGUCg-GGCUGUUGUa-CUaGAc -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 222030 | 0.66 | 0.986928 |
Target: 5'- gGCCACGCgaaagcagcgcuGGCCCucCAccgccuGCGUGGUCUc -3' miRNA: 3'- -UGGUGCG------------UCGGGcuGU------UGUACUAGAc -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 196055 | 0.66 | 0.985291 |
Target: 5'- cACCGgGCGGaaggCCGGCGAgGUGGaCUGg -3' miRNA: 3'- -UGGUgCGUCg---GGCUGUUgUACUaGAC- -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 158356 | 0.66 | 0.985291 |
Target: 5'- cACCACccuGCGGCCgGACGAUGUcAUCg- -3' miRNA: 3'- -UGGUG---CGUCGGgCUGUUGUAcUAGac -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 86652 | 0.66 | 0.985291 |
Target: 5'- uCUugGCGG-CCGACGACAgguugagGAUCa- -3' miRNA: 3'- uGGugCGUCgGGCUGUUGUa------CUAGac -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 134866 | 0.66 | 0.985291 |
Target: 5'- cGCUGCGCA-CCCGAC-ACAcGGUCa- -3' miRNA: 3'- -UGGUGCGUcGGGCUGuUGUaCUAGac -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 211002 | 0.66 | 0.985291 |
Target: 5'- uCUGCaGCGuGCCCGACAagACAUGAUUcuUGa -3' miRNA: 3'- uGGUG-CGU-CGGGCUGU--UGUACUAG--AC- -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 32099 | 0.66 | 0.985291 |
Target: 5'- cGCCAUGC-GUuuGGCGGCGcggcUGAUCUc -3' miRNA: 3'- -UGGUGCGuCGggCUGUUGU----ACUAGAc -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 184127 | 0.66 | 0.985291 |
Target: 5'- --uGCGCGGCCgaGACGGCGuguUGAUCg- -3' miRNA: 3'- uggUGCGUCGGg-CUGUUGU---ACUAGac -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 125894 | 0.66 | 0.985119 |
Target: 5'- uCCACGCccagcaugcacgaGGCCCGGCcGCgcggguuguuuGUGAUCUu -3' miRNA: 3'- uGGUGCG-------------UCGGGCUGuUG-----------UACUAGAc -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 221357 | 0.66 | 0.983502 |
Target: 5'- cACCugGCcGCgCaGCGACAUGGUCc- -3' miRNA: 3'- -UGGugCGuCGgGcUGUUGUACUAGac -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 124985 | 0.66 | 0.983502 |
Target: 5'- uCCACGCGGCgCaGCAGCGUcagGGUCa- -3' miRNA: 3'- uGGUGCGUCGgGcUGUUGUA---CUAGac -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 137444 | 0.66 | 0.983502 |
Target: 5'- aGCaCGCGCGgcuGCCCGACAc---GGUCUGc -3' miRNA: 3'- -UG-GUGCGU---CGGGCUGUuguaCUAGAC- -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 203695 | 0.66 | 0.983502 |
Target: 5'- aGCCGCGCGGCauGuugcGCGcCGUGAUCUu -3' miRNA: 3'- -UGGUGCGUCGggC----UGUuGUACUAGAc -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 117438 | 0.66 | 0.981554 |
Target: 5'- uCCGCGCGGCCUGACuAGCcgccugucgGUGcggCUGu -3' miRNA: 3'- uGGUGCGUCGGGCUG-UUG---------UACua-GAC- -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 50776 | 0.66 | 0.981554 |
Target: 5'- gACCGCGCGGCgguccuggucgaUCGGCGACgGUGAUg-- -3' miRNA: 3'- -UGGUGCGUCG------------GGCUGUUG-UACUAgac -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 59547 | 0.66 | 0.981554 |
Target: 5'- cCCGgcUGCAGCUgGACGcCGUGAUCg- -3' miRNA: 3'- uGGU--GCGUCGGgCUGUuGUACUAGac -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 31366 | 0.66 | 0.981554 |
Target: 5'- aGCCGCuGCAcgucGCCgGACAGCAUGcgUa- -3' miRNA: 3'- -UGGUG-CGU----CGGgCUGUUGUACuaGac -5' |
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14280 | 5' | -53.9 | NC_003521.1 | + | 126694 | 0.66 | 0.981554 |
Target: 5'- cGCCAgGCAGUacUCGAC--CAUGAUCUu -3' miRNA: 3'- -UGGUgCGUCG--GGCUGuuGUACUAGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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