miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 5' -53.9 NC_003521.1 + 57244 0.66 0.986928
Target:  5'- -gCACGCAGCCCGuuuugugUAUGGUgUGg -3'
miRNA:   3'- ugGUGCGUCGGGCuguu---GUACUAgAC- -5'
14280 5' -53.9 NC_003521.1 + 228990 0.66 0.986928
Target:  5'- gGCgGCGCAGgaCCGGCAGCAcgGAgCUa -3'
miRNA:   3'- -UGgUGCGUCg-GGCUGUUGUa-CUaGAc -5'
14280 5' -53.9 NC_003521.1 + 222030 0.66 0.986928
Target:  5'- gGCCACGCgaaagcagcgcuGGCCCucCAccgccuGCGUGGUCUc -3'
miRNA:   3'- -UGGUGCG------------UCGGGcuGU------UGUACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 196055 0.66 0.985291
Target:  5'- cACCGgGCGGaaggCCGGCGAgGUGGaCUGg -3'
miRNA:   3'- -UGGUgCGUCg---GGCUGUUgUACUaGAC- -5'
14280 5' -53.9 NC_003521.1 + 158356 0.66 0.985291
Target:  5'- cACCACccuGCGGCCgGACGAUGUcAUCg- -3'
miRNA:   3'- -UGGUG---CGUCGGgCUGUUGUAcUAGac -5'
14280 5' -53.9 NC_003521.1 + 184127 0.66 0.985291
Target:  5'- --uGCGCGGCCgaGACGGCGuguUGAUCg- -3'
miRNA:   3'- uggUGCGUCGGg-CUGUUGU---ACUAGac -5'
14280 5' -53.9 NC_003521.1 + 32099 0.66 0.985291
Target:  5'- cGCCAUGC-GUuuGGCGGCGcggcUGAUCUc -3'
miRNA:   3'- -UGGUGCGuCGggCUGUUGU----ACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 211002 0.66 0.985291
Target:  5'- uCUGCaGCGuGCCCGACAagACAUGAUUcuUGa -3'
miRNA:   3'- uGGUG-CGU-CGGGCUGU--UGUACUAG--AC- -5'
14280 5' -53.9 NC_003521.1 + 86652 0.66 0.985291
Target:  5'- uCUugGCGG-CCGACGACAgguugagGAUCa- -3'
miRNA:   3'- uGGugCGUCgGGCUGUUGUa------CUAGac -5'
14280 5' -53.9 NC_003521.1 + 134866 0.66 0.985291
Target:  5'- cGCUGCGCA-CCCGAC-ACAcGGUCa- -3'
miRNA:   3'- -UGGUGCGUcGGGCUGuUGUaCUAGac -5'
14280 5' -53.9 NC_003521.1 + 125894 0.66 0.985119
Target:  5'- uCCACGCccagcaugcacgaGGCCCGGCcGCgcggguuguuuGUGAUCUu -3'
miRNA:   3'- uGGUGCG-------------UCGGGCUGuUG-----------UACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 203695 0.66 0.983502
Target:  5'- aGCCGCGCGGCauGuugcGCGcCGUGAUCUu -3'
miRNA:   3'- -UGGUGCGUCGggC----UGUuGUACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 124985 0.66 0.983502
Target:  5'- uCCACGCGGCgCaGCAGCGUcagGGUCa- -3'
miRNA:   3'- uGGUGCGUCGgGcUGUUGUA---CUAGac -5'
14280 5' -53.9 NC_003521.1 + 137444 0.66 0.983502
Target:  5'- aGCaCGCGCGgcuGCCCGACAc---GGUCUGc -3'
miRNA:   3'- -UG-GUGCGU---CGGGCUGUuguaCUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 221357 0.66 0.983502
Target:  5'- cACCugGCcGCgCaGCGACAUGGUCc- -3'
miRNA:   3'- -UGGugCGuCGgGcUGUUGUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 50776 0.66 0.981554
Target:  5'- gACCGCGCGGCgguccuggucgaUCGGCGACgGUGAUg-- -3'
miRNA:   3'- -UGGUGCGUCG------------GGCUGUUG-UACUAgac -5'
14280 5' -53.9 NC_003521.1 + 117438 0.66 0.981554
Target:  5'- uCCGCGCGGCCUGACuAGCcgccugucgGUGcggCUGu -3'
miRNA:   3'- uGGUGCGUCGGGCUG-UUG---------UACua-GAC- -5'
14280 5' -53.9 NC_003521.1 + 126694 0.66 0.981554
Target:  5'- cGCCAgGCAGUacUCGAC--CAUGAUCUu -3'
miRNA:   3'- -UGGUgCGUCG--GGCUGuuGUACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 31366 0.66 0.981554
Target:  5'- aGCCGCuGCAcgucGCCgGACAGCAUGcgUa- -3'
miRNA:   3'- -UGGUG-CGU----CGGgCUGUUGUACuaGac -5'
14280 5' -53.9 NC_003521.1 + 59547 0.66 0.981554
Target:  5'- cCCGgcUGCAGCUgGACGcCGUGAUCg- -3'
miRNA:   3'- uGGU--GCGUCGGgCUGUuGUACUAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.