miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14288 5' -60.4 NC_003521.1 + 162336 0.66 0.829982
Target:  5'- cCGCAGgcgGCgACUGC-GGGCGUGGGc- -3'
miRNA:   3'- -GCGUCag-CG-UGGUGuCCCGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 181788 0.66 0.829982
Target:  5'- gGUAGUCGCgauccucguGCguCAGGGCG-GGGu- -3'
miRNA:   3'- gCGUCAGCG---------UGguGUCCCGCaCCCua -5'
14288 5' -60.4 NC_003521.1 + 87719 0.66 0.829982
Target:  5'- uGCcGUCGCGCgCGCccGGcGGCGUGGuGGg -3'
miRNA:   3'- gCGuCAGCGUG-GUG--UC-CCGCACC-CUa -5'
14288 5' -60.4 NC_003521.1 + 195840 0.66 0.829982
Target:  5'- aGCgAGaucUCGCGCgGCAGGGUucgGGGAUc -3'
miRNA:   3'- gCG-UC---AGCGUGgUGUCCCGca-CCCUA- -5'
14288 5' -60.4 NC_003521.1 + 40807 0.66 0.821935
Target:  5'- gCGCGGUCaGCuauucGCCuCGGGGCG-GGGc- -3'
miRNA:   3'- -GCGUCAG-CG-----UGGuGUCCCGCaCCCua -5'
14288 5' -60.4 NC_003521.1 + 113460 0.66 0.821935
Target:  5'- aCGCAccugccgCGCACCACggAGGGCGUGcaGAUc -3'
miRNA:   3'- -GCGUca-----GCGUGGUG--UCCCGCACc-CUA- -5'
14288 5' -60.4 NC_003521.1 + 141916 0.66 0.817031
Target:  5'- aGCAGaCGCACUACAGccgccugaccgugcaGcGCGUGGGc- -3'
miRNA:   3'- gCGUCaGCGUGGUGUC---------------C-CGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 32675 0.66 0.816209
Target:  5'- aGCAaggagcugccggaucGagGCGCCACGGGGCuaauauagcuaggGUGGGGg -3'
miRNA:   3'- gCGU---------------CagCGUGGUGUCCCG-------------CACCCUa -5'
14288 5' -60.4 NC_003521.1 + 187823 0.66 0.813732
Target:  5'- uCGUGGcUGUugCGCAGGGCGUuGcGGAc -3'
miRNA:   3'- -GCGUCaGCGugGUGUCCCGCA-C-CCUa -5'
14288 5' -60.4 NC_003521.1 + 99916 0.66 0.812903
Target:  5'- aCGCGaucggCGUugCGCAGGGCGUaaucccgcacgcaGGGGg -3'
miRNA:   3'- -GCGUca---GCGugGUGUCCCGCA-------------CCCUa -5'
14288 5' -60.4 NC_003521.1 + 153411 0.66 0.80538
Target:  5'- uGCAGgUGCGCCACc-GGCGUGGu-- -3'
miRNA:   3'- gCGUCaGCGUGGUGucCCGCACCcua -5'
14288 5' -60.4 NC_003521.1 + 105604 0.66 0.80538
Target:  5'- gCGCAGccgcucaggCGCugCAgCAGGGCGUGcucGGGc -3'
miRNA:   3'- -GCGUCa--------GCGugGU-GUCCCGCAC---CCUa -5'
14288 5' -60.4 NC_003521.1 + 8631 0.66 0.80538
Target:  5'- cCGCGGggGC-CCAU--GGCGUGGGAg -3'
miRNA:   3'- -GCGUCagCGuGGUGucCCGCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 36727 0.66 0.788259
Target:  5'- gCGCAGUgGCGCCAcCAGGuGCacGUGGc-- -3'
miRNA:   3'- -GCGUCAgCGUGGU-GUCC-CG--CACCcua -5'
14288 5' -60.4 NC_003521.1 + 91596 0.66 0.788259
Target:  5'- aGUAGcCGCGCCGCAgcuucuuguGGGCcUGGGu- -3'
miRNA:   3'- gCGUCaGCGUGGUGU---------CCCGcACCCua -5'
14288 5' -60.4 NC_003521.1 + 209540 0.67 0.780385
Target:  5'- cCGCGGUuaUGCGCCcgGCGGGGUGgcggcgacgguggcgGGGGUc -3'
miRNA:   3'- -GCGUCA--GCGUGG--UGUCCCGCa--------------CCCUA- -5'
14288 5' -60.4 NC_003521.1 + 123188 0.67 0.779504
Target:  5'- gCGCAGUCGCAggcggaacgaCACcGGGuCGcUGGGAc -3'
miRNA:   3'- -GCGUCAGCGUg---------GUGuCCC-GC-ACCCUa -5'
14288 5' -60.4 NC_003521.1 + 98195 0.67 0.77063
Target:  5'- cCGCGGUucuccuuguUGCugUcggcggGCAGcGGCGUGGGAg -3'
miRNA:   3'- -GCGUCA---------GCGugG------UGUC-CCGCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 138024 0.67 0.77063
Target:  5'- gCGCGugcGUCGCugccgGCgCACGGGGCuGUGGGu- -3'
miRNA:   3'- -GCGU---CAGCG-----UG-GUGUCCCG-CACCCua -5'
14288 5' -60.4 NC_003521.1 + 135783 0.67 0.77063
Target:  5'- gGCAGUgGCGCUgcgggaggaggaGCAGcGGCGgaGGGAg -3'
miRNA:   3'- gCGUCAgCGUGG------------UGUC-CCGCa-CCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.